Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90837g00002 ATGGCGGCGACGGAGCCGGATCTCGAATACTGGTGGAGGACGATGATCGGATTCGACGAAGTATCCAACGGATCTCCTAACAACGACGACGTCAAGCCCGCCGATTTGAGAGGCGGCGGCGGTTTAGCCGCCACCGTCGACGGACCCGTCGCCACCGGCGGATTCTCCGGCTATGTCGGCGGCGCCGCTGGCGCTTTCGAAAATCCGGAATATGTGGTAAACTCATTTTCAAATTGTGGTGGAATAGCAGATGCCAATACAGTTGGCTCTTCCCAAAACCTCATTACCAAGAATCCCACCATTTCTGCTACAAATGATTCTCAGTCATCCATGTGTGGCACTGTTGGAAGTCCAGTATCTTCAAATAAACCGAGCGACCGAGACAATCAAGCCAAAGTAGCTTCGAGTGGTTCCTCTGATCCTTCTGATGAGGATGATGAAACTGGTCCTTGTGAACACAGCACAAATCCTGTTGATATGAAGCGCCTTAGAAGGAAGGTTTCTAATCGCGAATCAGCAAGGAGGTCAAGAAGAAGAAAACAAGCGCATTTAGCTGACCTTGAGATGCAGGTTGAAAAGCTGAAACTGGAAAATGCAACCCTATACAAGCAGTTTAACGATGCTAGACAACAATTTCACGACGCGGATACTAATAACCGAGTCCTAAAATCAGATGTTGAAGCTCTGAGAGCTAAGGTGAAGTTAGCCGAGGATATGGTCACTCGAGGCTCTGTTACGACGCTAAACAACCAACTTCTTCAGCCTCATTGTCAACTGAACCCGCCGCCACAGCTTAACACGACGGCTAGTAGTCTGCGTCGTATGGCACACGTGTCGCCAACCATCACCGTCCATGCAAACGACGCCTCCTTATACAATAATGGTGGTGGAGGTGGACATAATCACCCAGTTCTTGGTGGGCTGGGAGACTTGGATATTCCTTACAATGATATCAACAATGGAGTCATAAACAATGCTCTAAACTCCATGAACATCTGGCAGCAGTAA 1008 0.4881 MAATEPDLEYWWRTMIGFDEVSNGSPNNDDVKPADLRGGGGLAATVDGPVATGGFSGYVGGAAGAFENPEYVVNSFSNCGGIADANTVGSSQNLITKNPTISATNDSQSSMCGTVGSPVSSNKPSDRDNQAKVASSGSSDPSDEDDETGPCEHSTNPVDMKRLRRKVSNRESARRSRRRKQAHLADLEMQVEKLKLENATLYKQFNDARQQFHDADTNNRVLKSDVEALRAKVKLAEDMVTRGSVTTLNNQLLQPHCQLNPPPQLNTTASSLRRMAHVSPTITVHANDASLYNNGGGGGHNHPVLGGLGDLDIPYNDINNGVINNALNSMNIWQQ 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90837g00002 335 SUPERFAMILY Leucine zipper domain 161 212 IPR046347 GO:0003700|GO:0006355
Stsc90837g00002 335 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 164 179 IPR004827 GO:0003700|GO:0006355
Stsc90837g00002 335 PANTHER BASIC LEUCINE ZIPPER 63 78 297 - -
Stsc90837g00002 335 SMART brlzneu 157 221 IPR004827 GO:0003700|GO:0006355
Stsc90837g00002 335 MobiDBLite consensus disorder prediction 99 183 - -
Stsc90837g00002 335 Pfam bZIP transcription factor 160 208 IPR004827 GO:0003700|GO:0006355
Stsc90837g00002 335 FunFam BZIP transcription factor 159 210 - -
Stsc90837g00002 335 MobiDBLite consensus disorder prediction 99 138 - -
Stsc90837g00002 335 MobiDBLite consensus disorder prediction 148 166 - -
Stsc90837g00002 335 CDD bZIP_plant_GBF1 162 213 IPR045314 GO:0003700|GO:0006355
Stsc90837g00002 335 Coils Coil 219 239 - -
Stsc90837g00002 335 Coils Coil 170 211 - -
Stsc90837g00002 335 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 159 211 IPR004827 GO:0003700|GO:0006355
Stsc90837g00002 335 Gene3D - 160 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90837g00002 Stsc-Chr90837 23669 28013 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90837g00002 106 308 bZIP Transcription Factor Family AT5G24800 53.110 4.32e-55 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Stsc90837g00002 bZIP_1 1.3e-11 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90837g00002 K25784 - gmx:778193 306.99