Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90836g00008 ATGGAGTGTAACAGGGATGAGGCCTTGAGGGCTAAGGAAGTTGCTGAAAATAAAATGCAGCGGGGTGACTTTCAAGGGGCGCTCAAGTTTGCTCTGAAGGCAAAGAAAATGTATGCTGATGTTGAAAACATAACTCAGATCCTTACGGTTTGTGAGGTTCACAATGCAGCACAGAACAAACTCACTGGTGGAATTGACATGGACTGGTATGCTATTCTTCAAACTGCACAATTGGCTGATGAAGCGACCATAAAGAAGCAGTACCGGAAGCTTGCATTATTGCTTCATCCTGATAAGAACAAATTTCCTGGTACAGAAGCTGCTTTCAAGTTGATTGGGGAAGCCAACGGAGTGTTGGGTGACCAAGCAAAACGTTCTGCGTATGATAGGAAATATAAGGTCTCCGTGAAACCTGCATTCACTGCAAGAAATGTTCAAAATGCAACAAATTATCAGAACAATTATTTTCCAAAGTCCACCTTTCGGAATGGGCATCAGCACCCGGAACCACAGCTATGTTGGGCAACTTGCCCAAATTGTAACAATAAGTGCCCATACTACAGAGAAGCCATTATGTGCACAACCCTAAGTTGTTATAAATGTTTTAAAAACTTTGATGCTTTGCTGGACCAGAATGTCTCACCTGGATATACAAGGACCCCATTTACTAACCAGAATGAGGCTCAAAAGCATGCTGCCCCAAAACCAGCTTCAAAAAGTAATGGTGGAAATGCAGAGAACTTTGTGCCTGTGTCTATGAGGAAGTGCGCTGCTGACGGAGTTCGTGTGCATCGTAAAGGTAGAAAGAGTAATGATGGCTCTGTGGCTAGAGGCCAATCAAAGGGCAATGTTTCTGCATCTAAAGGGACCAAATCAACTGAATCACAACACTCAACAAATGTTGGAAGTAAGAGAGTGAGACAGTCAGTTCCAGATCCAAGACAAAATTTCAACTATGGCAATGGCAAAGGCAAAGTAGATGCCAATGCTCAGGAGAATTGTGCTGATCCTTCTACACTTAATGCTAGGAGATCTTCTAGGCAAAGGTTGCGTGTTTCATACGCTGAAAGTGATGATGATAGTGATGATGATGATGATTATGATGATGATGATGATGATGATGATGATTTGGAGAGCCCTTCCAAAAAACAGAAAAATGAATCATTCGACACCAATGGATTTGTGAAGAAGGAAGAGTCTGCAGGTGAGGCAGCTGATCAGAATGGAAAGGTGAGAAGTGAAGTTTGCGATCCACCTGAAGTAGCATTTTCACACAATAAAAGCAAATTCGAGGACAAATGCTCAACATTTAATTCACATGCCCCCTCTGATGCAGAGTTCATTATTTGTCCTGATGCGGAATTCAATAATTTTGATAAGCATAAGGCTGAGGATTGTTTTGCTGTTAATCAATTATGGGCCCTTTATGTTCCTGATGATGCTATGCCAAGATATTATGTTTTCATTAAGAAAGTGTTCTCCCCTTTCAAGCTTCTGATCACTTGGTTAGAGCCTGACCCAGATAATGAAGATGAGATTGCTTGGCATAGTTCAGATTTGCCTGTTGCTTGTGGTAAGTTCAGAGTTTCTAGTTCTCAGAACATCAGAGATTGTACTACGTTTTCTCACCAAATAGGCTATTTGAAAGGAAGTCGCAGAGGTTCTTATCTGATATATCCCAAGAAAGGAGAAACTTGGGCAATTTTCAGGGATTGGGATATCAAATGGAGTTCAAATCCTAAAGAGCATTCAAAGTATAAATTTGACTTTGTGGAAATCCTGACAGATTTCAGTGAAAATGTTGGCATCGAAGTTGCTTTTCTCAGTAAAGTTCAAGGATTTATCAGCATCTTTCAGAGAAATGAGAAGAATGGAAAGGACACATTTTCTGTTCCACCTAATGAGGTTTATCGGTTCTCGCATCAAGTTCCTTCATGCAAGATGACTGTGACTGGTGCTGAAAGGGAAGGTGTTCCTATAGGTTCTTTTGAACTTGATCCTGCTGCTGTGCCTCTTGATCTTCTTGGGAGGACGTGTAAAGCGGGAGAATAG 2052 0.4137 MECNRDEALRAKEVAENKMQRGDFQGALKFALKAKKMYADVENITQILTVCEVHNAAQNKLTGGIDMDWYAILQTAQLADEATIKKQYRKLALLLHPDKNKFPGTEAAFKLIGEANGVLGDQAKRSAYDRKYKVSVKPAFTARNVQNATNYQNNYFPKSTFRNGHQHPEPQLCWATCPNCNNKCPYYREAIMCTTLSCYKCFKNFDALLDQNVSPGYTRTPFTNQNEAQKHAAPKPASKSNGGNAENFVPVSMRKCAADGVRVHRKGRKSNDGSVARGQSKGNVSASKGTKSTESQHSTNVGSKRVRQSVPDPRQNFNYGNGKGKVDANAQENCADPSTLNARRSSRQRLRVSYAESDDDSDDDDDYDDDDDDDDDLESPSKKQKNESFDTNGFVKKEESAGEAADQNGKVRSEVCDPPEVAFSHNKSKFEDKCSTFNSHAPSDAEFIICPDAEFNNFDKHKAEDCFAVNQLWALYVPDDAMPRYYVFIKKVFSPFKLLITWLEPDPDNEDEIAWHSSDLPVACGKFRVSSSQNIRDCTTFSHQIGYLKGSRRGSYLIYPKKGETWAIFRDWDIKWSSNPKEHSKYKFDFVEILTDFSENVGIEVAFLSKVQGFISIFQRNEKNGKDTFSVPPNEVYRFSHQVPSCKMTVTGAEREGVPIGSFELDPAAVPLDLLGRTCKAGE 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90836g00008 683 SMART dnaj_3 67 124 IPR001623 -
Stsc90836g00008 683 Gene3D DnaJ domain 65 169 IPR036869 -
Stsc90836g00008 683 MobiDBLite consensus disorder prediction 219 413 - -
Stsc90836g00008 683 MobiDBLite consensus disorder prediction 357 377 - -
Stsc90836g00008 683 PANTHER DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN-RELATED 1 674 - -
Stsc90836g00008 683 MobiDBLite consensus disorder prediction 273 316 - -
Stsc90836g00008 683 MobiDBLite consensus disorder prediction 258 272 - -
Stsc90836g00008 683 CDD DnaJ 68 121 IPR001623 -
Stsc90836g00008 683 PRINTS DnaJ domain signature 70 88 IPR001623 -
Stsc90836g00008 683 PRINTS DnaJ domain signature 104 124 IPR001623 -
Stsc90836g00008 683 PRINTS DnaJ domain signature 124 143 IPR001623 -
Stsc90836g00008 683 PRINTS DnaJ domain signature 88 103 IPR001623 -
Stsc90836g00008 683 MobiDBLite consensus disorder prediction 332 348 - -
Stsc90836g00008 683 MobiDBLite consensus disorder prediction 378 405 - -
Stsc90836g00008 683 ProSiteProfiles dnaJ domain profile. 68 132 IPR001623 -
Stsc90836g00008 683 Pfam Domain of unknown function (DUF3444) 448 649 IPR024593 -
Stsc90836g00008 683 Pfam DnaJ domain 68 129 IPR001623 -
Stsc90836g00008 683 SUPERFAMILY Chaperone J-domain 66 133 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90836g00008 Stsc-Chr90836 45543 47892 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90836g00008 4 207 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 32.547 1.43e-20 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90836g00008 - - aprc:113861153 665.611