Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90836g00004 ATGTACCAGATGCCATGCCAATGGGTGTCAACTGATGCTTACACTTTGGAATTGGTCCTTCAGGACAAGGAGGGCGATCGCATCCAATGTTCTATCCCTCATGAAAGCGTTTCAAATTTCGAGTCTCTTATACAAGAGAATTCCATATATTCCATGTGTAACTTCATTGTGAAAGTTGTGAGGGGTGGTTTACGAGTTACATCTCACAAATACAAGCTTGGCTTTTATGTGAAGACTTCAGTGAGGAGGCTTCCCAGTAATGAGTTCCCTTTTTCTCCCTTTCATTTCACTCCGTTTCCAGTTATTGAAGCCATGTGTTCACTCAATAACATTTTCCTTATAGACTGCATGGGACAGGTTGTTGGCAGGGAGGATCCTGAAGACATTATCACCAAGACTGGCCAGTCCAGTAAAAGGCTTCAGCTTTACTTGGAAGATGGGGAGAAAAATAAGATGAAGTGTACGCTCTTCGGGGATTTCGTTGATCAAGCTTTGCGGTATTTGGAGCCATTGGTTATAGTTACACAACTATTTAAGCCCCATGTCTTCTTGAGTGATGTGAATGTTCAGGCCAGCCTTTATGCTTCCCATGTTTTATTCAATCCAAGCTTACCTGCTGTTGTTGAATTCAGAGATAGGTTGCTGACTTTGGGTGAAGAGTTTACCCAACCTATTAGTCATGTGAAAAGCCAAGGACAACGGTCTGTAACTGATGAGATTAGTAGTGGTGAATTTCCACTGCGGACAGTTGAGGAGGTTCTTAATATGACCGAACCATGTTCCTGTTGGATTCTGGCAAGTATTGTTTCAATTGAAGGTGGGAGGGATGGTTGGTTTTATGCTTCTTGCAAAGGATGCTTCAAGAAAGTCATTCCAAAGAATGATGTGTACCATTGTGGTGAATGTGGACAGCATGGAACCAAGCCTCCAATAAAGTATCGTCTGAAAGTTATTGTTAACGATTTTACTGGATGTCTGAACCTCTTGCTGTGGAACTCTGAGGGTAGTATGATTGTTGGCAAGTCGGCCGCTGAAGTCAGGGCTGCTGGTAAAACTGAAAAAGATAGGTGTCGTCCAAAGATACTTGAGGAAATTATAGAGAAGAAATTTTTGTTCAAGATTTCTGTTAATGGCTAG 1137 0.4204 MYQMPCQWVSTDAYTLELVLQDKEGDRIQCSIPHESVSNFESLIQENSIYSMCNFIVKVVRGGLRVTSHKYKLGFYVKTSVRRLPSNEFPFSPFHFTPFPVIEAMCSLNNIFLIDCMGQVVGREDPEDIITKTGQSSKRLQLYLEDGEKNKMKCTLFGDFVDQALRYLEPLVIVTQLFKPHVFLSDVNVQASLYASHVLFNPSLPAVVEFRDRLLTLGEEFTQPISHVKSQGQRSVTDEISSGEFPLRTVEEVLNMTEPCSCWILASIVSIEGGRDGWFYASCKGCFKKVIPKNDVYHCGECGQHGTKPPIKYRLKVIVNDFTGCLNLLLWNSEGSMIVGKSAAEVRAAGKTEKDRCRPKILEEIIEKKFLFKISVNG 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90836g00004 378 Pfam Domain of unknown function DUF223 17 102 IPR003871 -
Stsc90836g00004 378 Gene3D - 7 83 IPR012340 -
Stsc90836g00004 378 Gene3D - 88 223 IPR012340 -
Stsc90836g00004 378 Gene3D - 230 378 IPR012340 -
Stsc90836g00004 378 SUPERFAMILY Nucleic acid-binding proteins 12 86 IPR012340 -
Stsc90836g00004 378 CDD RPA1_DBD_C 264 376 IPR047192 -
Stsc90836g00004 378 SUPERFAMILY Nucleic acid-binding proteins 247 376 IPR012340 -
Stsc90836g00004 378 CDD RPA1_DBD_A_like 14 81 - -
Stsc90836g00004 378 SUPERFAMILY Nucleic acid-binding proteins 110 214 IPR012340 -
Stsc90836g00004 378 CDD RPA1_DBD_B_like 115 214 - -
Stsc90836g00004 378 Pfam Replication factor-A C terminal domain 275 376 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90836g00004 Stsc-Chr90836 21604 24471 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90836g00004 20 377 Core DNA Replication Machinery Family AT5G08020 23.622 1.55e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90836g00004 - - ahf:112695129 377.481