Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90832g00008 ATGCAATTGCAACGGCTTGTTCTTGAGACAGAGTTAACAACCATTCGACCAGCAACTCCTTCTTCTTCGATCAATGAAACGAACTTCGACACAAACATGGTGATAATCCTGGCAGCCCTATTGTTCGCACTAGTGGGGGCCTTGGGTCTGAACTCCATAGCACGGTGTGCGCTCAGGTGCGGACGGAGGTTGACGGCAGAGCAAGAGGCGGCGAGGCTGGCCACAACAGGGCTGAAGAAGAGTTACCTGAGAAAGATCCCAGTGGCAGTGTACGGTTTCGGAGAGAATATCCTGGTGACGGAGTGCCCGATATGTTTGGGTGAGTTCGAGAAAGGAGATAAGATTAGAATGCTTCCTGAGTGCAGGCACGGGTTTCACGTGAGGTGTATTGACACGTGGCTCGTTTCGCATTCTTCTTGCCCTAATTGCCGACACTCCTTGCTTCAGAAGAAGCCTAAGCTTGATAATGGTGCTTCTTCTTCTTCAGATGGTGGTGGCGGGAGAGAAGATGGAGGAAACGTGGTGGTTGTCCTAGACCGGACGAGTTAA 549 0.5118 MQLQRLVLETELTTIRPATPSSSINETNFDTNMVIILAALLFALVGALGLNSIARCALRCGRRLTAEQEAARLATTGLKKSYLRKIPVAVYGFGENILVTECPICLGEFEKGDKIRMLPECRHGFHVRCIDTWLVSHSSCPNCRHSLLQKKPKLDNGASSSSDGGGGREDGGNVVVVLDRTS 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90832g00008 182 SMART ring_2 102 143 IPR001841 -
Stsc90832g00008 182 Pfam Ring finger domain 101 144 IPR001841 -
Stsc90832g00008 182 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 149 IPR013083 -
Stsc90832g00008 182 PANTHER RING-H2 FINGER PROTEIN ATL78 19 162 IPR044602 GO:0016567|GO:0016740
Stsc90832g00008 182 SUPERFAMILY RING/U-box 96 154 - -
Stsc90832g00008 182 ProSiteProfiles Zinc finger RING-type profile. 102 144 IPR001841 -
Stsc90832g00008 182 MobiDBLite consensus disorder prediction 153 182 - -
Stsc90832g00008 182 CDD RING-H2_EL5-like 101 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90832g00008 Stsc-Chr90832 39639 40643 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90832g00008 5 152 C3H Transcription Factor Family AT3G10910 54.938 3.90e-53 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90832g00008 - K19040 adu:107485262 238.039