Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90830g00005 ATGGCAAAGTGGAAGTGCTTGTTTGGATGGGTAAGAAGGTTCTTCATCACTTCAGAGCCAAAGGAAAATAAGCCAAAGAAATTGGGATGGAGGGGATGGAGTCTTGGAAGGTTCAAGTTGAAACGTCACAAGACAATCACAGGTGCTAGTAGAACATTAATGGATGCAAGAACCAAGCAGAGAGATCATGCTTTAGCCATGGCTATTGCAACAGCAGCAGCTGCAGAGGCTGCAATTGCGGCTGCCAATGCTGCTGCTGAGGTTGTCCGGCTCACCGGCTTCTCTCCTTCTTTCAATTCATCTTTGTCAAGGAGAGATCAAATCTCTGCTGCCATCAAGATTCAAAGCGCATACCGTGCTCATCTTGCAAGGAAAGCATTAAGAGCAATGAAGGGAGTTGTAAGATTGCAAGCTATAATTCGCGGTCAAGCTGTGAGGCGTCGACTGTTCAACGCTCGGAAGAAGTTACCTTCCAATGCAAGAAACATGGCAGAAGTCCAGGAAGGAAGCAGCCTTAGTAATGGTGACAGCTACAGAAGTGACTCAATCAAGCAATTTATAAAGCAAAAAAAGAAGTTGGAAGAGAAAGTATTGAGGGCTGAATGCTGTAGCAGTCAAAGAACCTGGGATTGTAGCTCTCACTCAAGAGAAGAAATTGAAGCCATATGGTTAAGAAAAGAAGAGGCCATTATCAAAAGAGAACGCATGAAGCAGTACTCTTCTTCACAGAGGCTAATAATCCAATCACCAGCTCTTCCTTTAAGCTTGATCAACAAGGAACAAGAACTGATGATTAGTTCACCAGTCTCGCTTTCGCGGCGATCATTTTCACATCACGGAAACAGAAGTTCGGTTGTGGATGAAAATTCTTTACCAAATTCACCAGTTTTTCTTCCAACATACATGGCTCTGACAGAATCAAGCAGAGCAAAAACAAGGTCATTGAGCACACCAAGGGAAAGAACAAGGTTTCTTGAAGATGTTTGCTGTGATGATGTAGTTACCATTTGCAGTGAAAACATTGAAGCTTCTCAGAAAACATGCAAGAGTGCTAAATACTAA 1062 0.4303 MAKWKCLFGWVRRFFITSEPKENKPKKLGWRGWSLGRFKLKRHKTITGASRTLMDARTKQRDHALAMAIATAAAAEAAIAAANAAAEVVRLTGFSPSFNSSLSRRDQISAAIKIQSAYRAHLARKALRAMKGVVRLQAIIRGQAVRRRLFNARKKLPSNARNMAEVQEGSSLSNGDSYRSDSIKQFIKQKKKLEEKVLRAECCSSQRTWDCSSHSREEIEAIWLRKEEAIIKRERMKQYSSSQRLIIQSPALPLSLINKEQELMISSPVSLSRRSFSHHGNRSSVVDENSLPNSPVFLPTYMALTESSRAKTRSLSTPRERTRFLEDVCCDDVVTICSENIEASQKTCKSAKY 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90830g00005 353 Pfam Protein of unknown function (DUF4005) 288 322 IPR025064 -
Stsc90830g00005 353 Pfam IQ calmodulin-binding motif 109 128 IPR000048 GO:0005515
Stsc90830g00005 353 ProSiteProfiles IQ motif profile. 129 158 IPR000048 GO:0005515
Stsc90830g00005 353 Gene3D - 106 156 - -
Stsc90830g00005 353 ProSiteProfiles IQ motif profile. 107 135 IPR000048 GO:0005515
Stsc90830g00005 353 PANTHER IQ-DOMAIN 5-RELATED 10 337 - -
Stsc90830g00005 353 SMART iq_5 106 128 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90830g00005 Stsc-Chr90830 29648 31111 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90830g00005 1 328 IQD Protein Family AT5G03960 38.786 7.82e-42 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90830g00005 - - gmx:100800767 281.952