Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90829g00009 ATGGAGGGAGTAGCGCCGCAAGGAGGAGCAGGAGGTGGACCGGCGCCGTTCTTGTTGAAGACGTATGACATGGTTGACGATTCCTCCACCGACGACATCGTTTCTTGGAACAGCTCCACCAACAGCAGCTTTGTTGTTTGGAACCCGCCGGAGTTCGCGCGCGTTCTTCTACCTACCTATTTCAAGCATAACAACTTTTCTAGCTTCATCCGCCAGCTTAATACCTATGGATTTCACAAAATACATCCTGAACGGTGGGAGTTTGCTAATGATGATTTTATCAAAGACCAAAAGCATCTTCTTAAGAATATCCACCGTAGGAAACCTATTCACAGTCATAGTCATCCTCCAGGCTCTGTTGTGGATCCAGAAAGGGCAGCATTTGAGGAAGAAATCGAAAAACTTAACCGTGAGAAATCTTCTATTGAATCCAATATTTTAAACTTCAAGCAACATCAGTCAACAGCGAAGCTTCATCTAGAGGATTTTCAGCAGCGATTAGACGGTATGGAGAAGAGGCAGAAACATTTGCTGAGCATTTTTGAAAAGGCGCTTCATAATCCTACTTTTGTTGAGCAGCTTTCCCGGAAAATCGAGTCCATGGATTTATCAGCATATAACAAGAAAAGACGATTGCCTCAAGTTGATGACGAGCAACCTGTTGTAGAAAGTAGTTTTGTGGACAATCCTAACAATTTTAGAATGGAATTCGGAAACATTTTCCATCAAGATTTCTCCAACAAACTCAGACTGGAATTGTCACCAGCTGTTTCAGATATGAACTTAGTGTCACGCAGCACACAAAGTTCAAATGAAGATGAGGAAAGTCCACAGAAGAAAACATCTGAAGAAGAACCAACAGGAATGCCAACAGGAATGCAGACAAGAATTCCATTTGCACCAGAAACATTGGAGCTTGCGGATACTGGGGCATCTTTTACTTTCAAGATGGATTCATGCTTATCACAAAGAGCGACAAACACTGATAGCTCGAAAATGCCCTCATTGGAGCCAAGTGGTGAAGAAGGTGATAGTCACATATCCTGCCAACTTACTCTGGCATCGTGCCCATTGAAGGTCAACAGAAATTCATCCTCAGCAAGACCACCCCAAACCCAAGCAAGACCACCCCAAACCCAAATAGACTGTCCTGAAATTGGCAAGTTGACAGAGCCTAGATTTCATTCCAACAATAAAGAATCCGAGAGTGGAGTTTTCTCAAACCGAAACCATGATGCAATCAATTTTGCTTCTTCGCTGGAAACTCAAAGTAACAAACAAGTTACTCAGCCAACTAGGGTAAATGATGTGTTTTGGGAACAGTTCCTTACGGAAAGACCAGGCTGTTCAGACAATGAGGAGGCGATATCCAACTACAGAGCAAACCCATGCGATGAGCAAGATGAAGGGCGGTTGAATGCAAGGAATGTTAAGAACATGAATCAGCTTACACTTTAA 1458 0.4314 MEGVAPQGGAGGGPAPFLLKTYDMVDDSSTDDIVSWNSSTNSSFVVWNPPEFARVLLPTYFKHNNFSSFIRQLNTYGFHKIHPERWEFANDDFIKDQKHLLKNIHRRKPIHSHSHPPGSVVDPERAAFEEEIEKLNREKSSIESNILNFKQHQSTAKLHLEDFQQRLDGMEKRQKHLLSIFEKALHNPTFVEQLSRKIESMDLSAYNKKRRLPQVDDEQPVVESSFVDNPNNFRMEFGNIFHQDFSNKLRLELSPAVSDMNLVSRSTQSSNEDEESPQKKTSEEEPTGMPTGMQTRIPFAPETLELADTGASFTFKMDSCLSQRATNTDSSKMPSLEPSGEEGDSHISCQLTLASCPLKVNRNSSSARPPQTQARPPQTQIDCPEIGKLTEPRFHSNNKESESGVFSNRNHDAINFASSLETQSNKQVTQPTRVNDVFWEQFLTERPGCSDNEEAISNYRANPCDEQDEGRLNARNVKNMNQLTL 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90829g00009 485 MobiDBLite consensus disorder prediction 324 346 - -
Stsc90829g00009 485 MobiDBLite consensus disorder prediction 261 294 - -
Stsc90829g00009 485 FunFam Heat shock transcription factor 1 10 108 - -
Stsc90829g00009 485 PRINTS Heat shock factor (HSF) domain signature 69 81 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc90829g00009 485 PRINTS Heat shock factor (HSF) domain signature 17 40 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc90829g00009 485 PRINTS Heat shock factor (HSF) domain signature 56 68 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc90829g00009 485 MobiDBLite consensus disorder prediction 360 379 - -
Stsc90829g00009 485 SUPERFAMILY "Winged helix" DNA-binding domain 13 107 IPR036390 -
Stsc90829g00009 485 Pfam HSF-type DNA-binding 17 107 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc90829g00009 485 Gene3D - 12 108 IPR036388 -
Stsc90829g00009 485 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 11 330 IPR027725 -
Stsc90829g00009 485 ProSitePatterns HSF-type DNA-binding domain signature. 57 81 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc90829g00009 485 MobiDBLite consensus disorder prediction 360 383 - -
Stsc90829g00009 485 SMART hsfneu3 13 107 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc90829g00009 485 Coils Coil 125 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90829g00009 Stsc-Chr90829 59303 62285 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90829g00009 17 485 HSF AT4G13980 53.975 1.42e-158 456
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Stsc90829g00009 HSF_DNA-bind 1.7e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90829g00009 K09419 - gmx:100816484 721.85