Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90828g00010 ATGCAGACCTCGTCGCCTGGAAATGTGTCGCAGTTTATAGCCACACAAGGGCCACTGCCTCACACATATGAGGATTTCTGGGAAATGGTTATCCAATATCAATGCCCTGCAATTGTGATGCTTACTAAGTTGGTTGACCATTATAAGGCAATAAAGTGTGGAGATTACTTTCAAGCTGAGGATGGACCTAGAGAATTTGGTAATATCTCTATTATAAGTAAATGGATAAAAACAACTGAAACTTTGCTGGTGTTGCGCCATTTGGAAGTAAATCATAAAGAGGCCGAAGATACACCGTTGTCTGTTTTGCACATTCAGTATCCTGATTGGCCTGACCATGGAGTTCCAAGAGATACATCTTCTGTTCGTGAGATTTTTAGAAGATTGCACCATTTGCCACCAAACCTAGGGCCAATAGTGGTTCACTGCAGTGCAGGCATTGGTAGAACTGGAACATACTGCACAATTCATAACACAATTCAGAGAATACTTGCTGGTGATATGTCTGCTTTAGATATCTCAAGTACAATAGCTATGTTCAGATCCCAACGAATTGGAATGGTTCAGACCCAGGATCAGTTTGTTTTCTGCTATGAAGCTATCATAGATGAACTAGAAGACCTTGTTTCTCTACAGCAGTGA 642 0.4112 MQTSSPGNVSQFIATQGPLPHTYEDFWEMVIQYQCPAIVMLTKLVDHYKAIKCGDYFQAEDGPREFGNISIISKWIKTTETLLVLRHLEVNHKEAEDTPLSVLHIQYPDWPDHGVPRDTSSVREIFRRLHHLPPNLGPIVVHCSAGIGRTGTYCTIHNTIQRILAGDMSALDISSTIAMFRSQRIGMVQTQDQFVFCYEAIIDELEDLVSLQQ 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90828g00010 213 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 123 195 IPR000387 GO:0016311|GO:0016791
Stsc90828g00010 213 PRINTS Protein tyrosine phosphatase signature 100 117 IPR000242 GO:0004725|GO:0006470
Stsc90828g00010 213 PRINTS Protein tyrosine phosphatase signature 12 32 IPR000242 GO:0004725|GO:0006470
Stsc90828g00010 213 PRINTS Protein tyrosine phosphatase signature 138 156 IPR000242 GO:0004725|GO:0006470
Stsc90828g00010 213 PRINTS Protein tyrosine phosphatase signature 187 197 IPR000242 GO:0004725|GO:0006470
Stsc90828g00010 213 PRINTS Protein tyrosine phosphatase signature 171 186 IPR000242 GO:0004725|GO:0006470
Stsc90828g00010 213 PANTHER RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE 9 206 - -
Stsc90828g00010 213 SMART ptp_7 101 203 IPR003595 -
Stsc90828g00010 213 Gene3D Protein tyrosine phosphatase superfamily 1 206 IPR029021 -
Stsc90828g00010 213 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 10 205 IPR029021 -
Stsc90828g00010 213 SMART PTPc_3 1 206 IPR000242 GO:0004725|GO:0006470
Stsc90828g00010 213 Pfam Protein-tyrosine phosphatase 9 202 IPR000242 GO:0004725|GO:0006470
Stsc90828g00010 213 CDD PTPc_plant_PTP1 1 199 - -
Stsc90828g00010 213 ProSiteProfiles PTP type protein phosphatase domain profile. 1 204 IPR000242 GO:0004725|GO:0006470
Stsc90828g00010 213 ProSitePatterns Tyrosine specific protein phosphatases active site. 141 151 IPR016130 GO:0016311|GO:0016791
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90828g00010 Stsc-Chr90828 55938 58308 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90828g00010 1 210 Protein tyrosine phosphatase (PTP) family AT1G71860 74.286 7.31e-125 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90828g00010 - - pvu:PHAVU_007G087900g 384.03