Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90828g00009 ATGAGGAGAAGATGCACTGTGGCTCTCGATGCCGTCAATTTGAACAAAAACCGATACACCGATGTCTTGCCATTTGACAATAACAGGCTTGTTCTCAAGTCAAGTACAGATTATAGGCCTGAAGCACAGGGATATATCAATGCGAGCTGCATATCTACCTCGTCGCCTGGAAATGTGTCGCAGTTTATAGCCACACAAGGGCCACTGCCTCACACATATGAGGATTTCTGGGAAATGGTTATCCAATATCAATGCCCTGCAATTGTGATGCTTACTAAGTTGGTTGACCATTATAAGGCAATAAAGTGTGGAGATTACTTTCAAGCTGAGGATGGACCTAGAGAATTTGGTAATATCTCTATTATAAGTAAATGGATAAAAACAACTGAAACTTTGCTGGTGTTGCGCCATTTGGAAGTAAATCATAAAGAGGCCGAAGATACACCGTTGTCTGTTTTGCACATTCAGTATCCTGATTGGCCTGACCATGGAGTTCCAAGAGATACATCTTCTGTTCGTGAGATTTTTAGAAGATTGCACCATTTGCCACCAAACCTAGGGCCAATAGTGGTTCACTGCAGTGCAGGCATTGGTAGAACTGGAACATACTGCACAATTCATAACACAATTCAGAGAATACTTGCTGGTGATATGTCTGCTTTAGATATCTCAAGTACAATAGCTATGTTCAGATCCCAACGAATTGGAATGGTTCAGACCCAGGATCAGTTTGTTTTCTGCTATGAAGCTATCATAGATGAACTAGAAGACCTTGTTTCTCTACAGCAGTGA 792 0.4154 MRRRCTVALDAVNLNKNRYTDVLPFDNNRLVLKSSTDYRPEAQGYINASCISTSSPGNVSQFIATQGPLPHTYEDFWEMVIQYQCPAIVMLTKLVDHYKAIKCGDYFQAEDGPREFGNISIISKWIKTTETLLVLRHLEVNHKEAEDTPLSVLHIQYPDWPDHGVPRDTSSVREIFRRLHHLPPNLGPIVVHCSAGIGRTGTYCTIHNTIQRILAGDMSALDISSTIAMFRSQRIGMVQTQDQFVFCYEAIIDELEDLVSLQQ 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90828g00009 263 ProSiteProfiles PTP type protein phosphatase domain profile. 1 254 IPR000242 GO:0004725|GO:0006470
Stsc90828g00009 263 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 173 245 IPR000387 GO:0016311|GO:0016791
Stsc90828g00009 263 FunFam Tyrosine-protein phosphatase non-receptor type 12 1 262 - -
Stsc90828g00009 263 PANTHER RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE 10 256 - -
Stsc90828g00009 263 ProSitePatterns Tyrosine specific protein phosphatases active site. 191 201 IPR016130 GO:0016311|GO:0016791
Stsc90828g00009 263 Pfam Protein-tyrosine phosphatase 13 252 IPR000242 GO:0004725|GO:0006470
Stsc90828g00009 263 SMART ptp_7 151 253 IPR003595 -
Stsc90828g00009 263 SMART PTPc_3 1 256 IPR000242 GO:0004725|GO:0006470
Stsc90828g00009 263 CDD PTPc_plant_PTP1 45 249 - -
Stsc90828g00009 263 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 5 256 IPR029021 -
Stsc90828g00009 263 PRINTS Protein tyrosine phosphatase signature 44 51 IPR000242 GO:0004725|GO:0006470
Stsc90828g00009 263 PRINTS Protein tyrosine phosphatase signature 150 167 IPR000242 GO:0004725|GO:0006470
Stsc90828g00009 263 PRINTS Protein tyrosine phosphatase signature 62 82 IPR000242 GO:0004725|GO:0006470
Stsc90828g00009 263 PRINTS Protein tyrosine phosphatase signature 221 236 IPR000242 GO:0004725|GO:0006470
Stsc90828g00009 263 PRINTS Protein tyrosine phosphatase signature 237 247 IPR000242 GO:0004725|GO:0006470
Stsc90828g00009 263 PRINTS Protein tyrosine phosphatase signature 188 206 IPR000242 GO:0004725|GO:0006470
Stsc90828g00009 263 Gene3D Protein tyrosine phosphatase superfamily 1 256 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90828g00009 Stsc-Chr90828 55128 58747 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90828g00009 6 260 Protein tyrosine phosphatase (PTP) family AT1G71860 71.373 4.45e-144 405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90828g00009 - - pvu:PHAVU_007G087900g 474.937