Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90827g00003 ATGGAAGACTTCCAAGTATCCATCCAACTTTTTCTAATTTGTCTAATCTCCACAATTGCGGTTAGAGCTGTTATTCTCACAAGAAATCGCAACAAGAGCGACCATCATCCTCAAAACCTACCAAGCCCACAGTCATTACCCATCATTGGACACCTTCACTTAATCTCTTCACTACCACATCAAAGCTTCCATAATCTCTCAACTCGCTATGGACCCATCTTTCAAATCTTCCTCGGCTCATTCCCATGTGTAGTAGTTTCTACACCAGAAATCGCCAAAGAGTTTCTCAAAACACATGAATCTTCCTTTTCTAACCGCTTCATCACGTTGAGCATGGTAGATTACATAACTTATGGCTCAAAGGGGATAGTGTTTGCCCCTTACGGAAGTCATTGGAAGTTCATAAAGAAGCTCTGTATGTCCGAGCTTCTCGGCCAAAGAACCCTCGACCAGCATCTTCTTTTAAGGCGCGAGGAGACTTTGAGATTCGTCAAAGCCCTGAAGAAGAAAGGGGAAGCCGGAGAAACTGTTGATATTAGTGGCGAACTCATTACTCTCACTAATAATGTCATTTCAAGAATGGCAATGAGCATAAGGTGTTTTGAAGAAGGAGGCGACGACGGCGGTTTAGATGATACTACAGAGATAAGGAAGATGGTAAAAGACATGATTGAGTTTGCCGGAAAATTAAATAATGTTTCCGATTTTATTGGGATTTTGAAGAATTGGGACTTGCAAGGAATGAATAAGAGGCTAAAGAAGACGAGGGGGAGGTTTGATTCATTGATGGAGAGAGTAATAAGGGAGCATAAATTAGTAAGGAAGAATAGGAAAGTAGAGGGAGATGAAGACGGGAGAGTAAGGGATCTTCTTGATATTTTGCTAGAAATACATGAAGATAATAAGGGAACTGATGAAATACAATTGACTATAGAGGATATCAAAGCTATAATCATGGACATATTCATGGCAGGAACTGACACATCAGCTACAAGTATGGAATGGGCTCTAGCAGAGTTAATCAACAACCCGCATGTGATGAAAAAAGCAAGACAAGAAATTGATTCACTAACTGCAAAAAACAGATTAATACAAGAGTCAGACGTTGCTAATCTTCCTTATTTGCAAGCCATTGTTAAAGAAACATTAAGACTTCACCCTGTAGTTCCATTTTTTCCCAGACAATCTACTGAGACCACTATCATTTGTGGCTATGAAATTCCACCAAAGACCTCGGTGCTTATTAATTTGTGGTCCATGGGAAGGGACCCCAAGATTTGGGAGAATCCACTTGAATTTAGGCCTGAGAGGTTTCTTGATGAAGAAAGACAGTTATTAGATTTGAGGGGACAGAATTTTCAATTATTGCCATTTGGGACTGGAAGAAGAATGTGCCCTGGAGCTTCACTAGCACTTCTAACAGTACCTACTAATCTTGGTGCCATGATTCAGTGTTTTGAATGGAAGGTTGATGGGATTGTTAGTATGGAGGAGAAACCTGATAGTGGCCTCACACTTTGTAGGGCTCATCCTTTAACTTGTGTTCCTCTGCCTCGTTTAGGTCAATTGAGCTACCTTAAAGAAAATTAG 1590 0.405 MEDFQVSIQLFLICLISTIAVRAVILTRNRNKSDHHPQNLPSPQSLPIIGHLHLISSLPHQSFHNLSTRYGPIFQIFLGSFPCVVVSTPEIAKEFLKTHESSFSNRFITLSMVDYITYGSKGIVFAPYGSHWKFIKKLCMSELLGQRTLDQHLLLRREETLRFVKALKKKGEAGETVDISGELITLTNNVISRMAMSIRCFEEGGDDGGLDDTTEIRKMVKDMIEFAGKLNNVSDFIGILKNWDLQGMNKRLKKTRGRFDSLMERVIREHKLVRKNRKVEGDEDGRVRDLLDILLEIHEDNKGTDEIQLTIEDIKAIIMDIFMAGTDTSATSMEWALAELINNPHVMKKARQEIDSLTAKNRLIQESDVANLPYLQAIVKETLRLHPVVPFFPRQSTETTIICGYEIPPKTSVLINLWSMGRDPKIWENPLEFRPERFLDEERQLLDLRGQNFQLLPFGTGRRMCPGASLALLTVPTNLGAMIQCFEWKVDGIVSMEEKPDSGLTLCRAHPLTCVPLPRLGQLSYLKEN 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90827g00003 529 PRINTS E-class P450 group I signature 465 488 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc90827g00003 529 PRINTS E-class P450 group I signature 333 359 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc90827g00003 529 PRINTS E-class P450 group I signature 313 330 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc90827g00003 529 PRINTS E-class P450 group I signature 455 465 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc90827g00003 529 PRINTS E-class P450 group I signature 67 86 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc90827g00003 529 PRINTS E-class P450 group I signature 376 394 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc90827g00003 529 PRINTS E-class P450 group I signature 416 440 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc90827g00003 529 PRINTS E-class P450 group I signature 91 112 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc90827g00003 529 PRINTS P450 superfamily signature 324 341 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc90827g00003 529 PRINTS P450 superfamily signature 456 465 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc90827g00003 529 PRINTS P450 superfamily signature 465 476 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc90827g00003 529 PRINTS P450 superfamily signature 377 388 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc90827g00003 529 FunFam Cytochrome P450 family protein 31 514 - -
Stsc90827g00003 529 Coils Coil 347 367 - -
Stsc90827g00003 529 Pfam Cytochrome P450 41 502 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc90827g00003 529 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 458 467 IPR017972 GO:0005506|GO:0016705
Stsc90827g00003 529 CDD CYP93 71 516 - -
Stsc90827g00003 529 PANTHER CYTOCHROME P450 98A9 12 521 - -
Stsc90827g00003 529 SUPERFAMILY Cytochrome P450 41 519 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc90827g00003 529 Gene3D Cytochrome P450 24 513 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90827g00003 Stsc-Chr90827 11279 13563 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90827g00003 1 525 Cytochrome P450 AT5G06900 45.333 2.96e-155 451
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90827g00003 K24188 - gmx:100805931 639.032