Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90826g00012 ATGATGATCGGTGAACAGCACCGTGCAAATCCCACCGTCCATGTGCCACCCTGGCCAACTCTCCTTGATGATCCAACGCCTGAGATGTATTCACCCTTCTCTGTAACCGGGATGTCCGTACACTCCGACTCCAATGCCGCCGATTACTCTCCCTACTACATGCACGAGGCTATCTCCGCGCTGCAGCGCTACCTTCCCTCCAACGACGTCGTCGACGGAGATGACTCCGATTCTGAGGCTGCGCGTGAGGCCGACGCGCCGGTCGACGCGTACTCCTGCGACCATTTCCGCATGTTCGAGTTCAAGGTGAGGAGGTGCGCGCGTGGCAGGTCCCATGACTGGACCGAGTGTCCGTACGCCCACCCTGGCGAGAAGGCTCGCCGCCGTGACCCGAGGAAGTTCCACTACTCAGGCGCGGCGTGCCCCGATTTCCGTAAGGGTGGTTGCAAGAAGGGTGACGCATGCGAGTACGCTCACGGCGTGTTCGAGTGCTGGCTCCATCCGGCGCGTTACCGCACGCAGCCATGCAAGGACGGAACCAGTTGCCGTAGGAGGGTGTGTTTCTTCGCCCACACGCCGGAGCAACTCAGGGTTTTGCCTCAGCACAGTCCCCGAAGCGTTGATTCCTATGACGGTTCCCCTCTCAGACATGCAATGGAGTCGTCGTGTGCGAAGGCGCTGCCGTTTCTGTCATCTCCGGGATCGGATTCTCCGCCGGCGGAGGAGTCTCCTCCGATGTCTCCGGTGACAAGGTCGTTGGGGCGGTCAGTGAATGTGAGCGAGATGATGGCTTCTCTCCGTAATCTGCAACTGAGTAAGGTTAAGTCGTTACCCTCTTCATGGAATGTTCCAATGGGTTCTCCCGGGTACGGATCTCCCCGTGGACCCATGATCCGACCCGGATTCTGCAGCCTTCCTTCAACGCCAACTGAGGGGCCAGGTGGGAGCAGTGTGAACTGCTTTGAACTTTGGGATCAGAGCTGCTGCTGTGAGGAGGAGCCCGTTATGGAGCGGGTTGAGTCCGGGAGGGGCATCAGGACCCGGATGTTCGAGAAGTTGAGTAAAGAGAATTCTCTTGATAGATCGGGTGGAGCTCCGGATGTTGGGTGGGTTTCGGAGCTCATTAAGTGA 1131 0.588 MMIGEQHRANPTVHVPPWPTLLDDPTPEMYSPFSVTGMSVHSDSNAADYSPYYMHEAISALQRYLPSNDVVDGDDSDSEAAREADAPVDAYSCDHFRMFEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKFHYSGAACPDFRKGGCKKGDACEYAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRVLPQHSPRSVDSYDGSPLRHAMESSCAKALPFLSSPGSDSPPAEESPPMSPVTRSLGRSVNVSEMMASLRNLQLSKVKSLPSSWNVPMGSPGYGSPRGPMIRPGFCSLPSTPTEGPGGSSVNCFELWDQSCCCEEEPVMERVESGRGIRTRMFEKLSKENSLDRSGGAPDVGWVSELIK 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90826g00012 376 Gene3D - 136 199 - -
Stsc90826g00012 376 FunFam Zinc finger CCCH domain-containing protein 66 93 161 - -
Stsc90826g00012 376 MobiDBLite consensus disorder prediction 231 252 - -
Stsc90826g00012 376 PANTHER UNKEMPT FAMILY MEMBER 11 376 IPR045234 -
Stsc90826g00012 376 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 139 160 IPR000571 GO:0046872
Stsc90826g00012 376 ProSiteProfiles Zinc finger C3H1-type profile. 136 162 IPR000571 GO:0046872
Stsc90826g00012 376 SMART c3hfinal6 170 193 IPR000571 GO:0046872
Stsc90826g00012 376 SMART c3hfinal6 135 161 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90826g00012 Stsc-Chr90826 71108 72615 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90826g00012 85 284 C2H2 Transcription Factor Family AT5G12850 50.481 3.50e-58 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Stsc90826g00012 zf-CCCH 2.3e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90826g00012 - - qsa:O6P43_003933 560.066