Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90826g00006 ATGAATAATAAGATGAAGAGCAAGTTGAGAAGCTCGGATCTGATAGATGCGAAACACTGCCCCGCTTGTGGACACAAGAAGCAGCAGGCGGAGTGGGAGTGGGTAGGTCTGCCAGCAGGAGTGAAGTTCGATCCAACAGACCAGGAACTGATAGAGCATCTGGATGCCAAAGTGGATGCAAACAAATCACACCCTTTGATCGATGAGTTCATTCCCACCATTGAAGGAGAAGATGGAATATGTTACACCCATCCCGAGAAGCTTCCAGGTGTAAGCAGGGATGGCTTGAGCAGACACTTCTTCCACAGGCCATCTAAGGCATACACTACTGGAACTCGAAAGAGAAGAAAGATTATTCAAAGCCATGAGGCTGAGGCCGAGCAGAGAGGAGACACCCGCTGGCACAAGACCGGTAAGACAAGGCCAGTCATGCTCAAAGGAATCCAGAAGGGCTGCAAGAAGATTCTGGTTCTCTACACCAACTTCGGCAAGAACAGGAAGCCCGAGAAGACCAACTGGGTCATGCATCAGTACCACCTCGGCCTCCACGAAGAGGAGACAGATGGGGAGCTCGTCGTCTCCAAGATTTTCTACCAGACTCAGCCCAGGCACTGCAATTGGTCTTCTTCTGCTGCTGCTCACCCGGTCAATAATAATAATAAGAATGAGATGTGTCCGGTTGTTGGATTCCCTCCTCCTCCTCCTCCTCCTCCGTTGGAACATTTGAGTATGATCCCTTTCAGAAAAACCATCCCTAATAATGAGGTTGGAATAATGTCGACATGCCAGCAACATACTACTCTTGGATCAGCAGCCTTCCATGAAAACACACCCACCATCCTTGACGACCTCTCTACTAGATTCATGACTACTACTGCTACTACTCATTTCAACCAGCAGCAGCAGCAGCATGATAAAAAAGTAATAGGAGGAGGAAGCTCTACTTCTGGTTTAGAGGAACTCATCATGGGCTGCACTTCAGCTTCAACCACTCATCATCATATCATCAAAGAGGCATCGATGATGACAAACACGAACCCGCAAGAAGCTGAGTGGTTCAAGTACTCTTCTTATTGGCCTCAGCTCCATTGGTAA 1095 0.4822 MNNKMKSKLRSSDLIDAKHCPACGHKKQQAEWEWVGLPAGVKFDPTDQELIEHLDAKVDANKSHPLIDEFIPTIEGEDGICYTHPEKLPGVSRDGLSRHFFHRPSKAYTTGTRKRRKIIQSHEAEAEQRGDTRWHKTGKTRPVMLKGIQKGCKKILVLYTNFGKNRKPEKTNWVMHQYHLGLHEEETDGELVVSKIFYQTQPRHCNWSSSAAAHPVNNNNKNEMCPVVGFPPPPPPPPLEHLSMIPFRKTIPNNEVGIMSTCQQHTTLGSAAFHENTPTILDDLSTRFMTTTATTHFNQQQQQHDKKVIGGGSSTSGLEELIMGCTSASTTHHHIIKEASMMTNTNPQEAEWFKYSSYWPQLHW 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90826g00006 364 Pfam No apical meristem (NAM) protein 38 180 IPR003441 GO:0003677|GO:0006355
Stsc90826g00006 364 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 15 323 IPR044799 GO:0003700
Stsc90826g00006 364 FunFam NAC domain-containing protein 73 46 203 - -
Stsc90826g00006 364 SUPERFAMILY NAC domain 29 199 IPR036093 GO:0003677|GO:0006355
Stsc90826g00006 364 Gene3D NAC domain 46 203 IPR036093 GO:0003677|GO:0006355
Stsc90826g00006 364 ProSiteProfiles NAC domain profile. 37 199 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90826g00006 Stsc-Chr90826 28663 32069 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90826g00006 3 361 NAC Transcription Factor Family AT5G56620 49.153 6.66e-115 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc90826g00006 NAM 7.1e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90826g00006 - - ahf:112790160 485.337