Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90824g00005 ATGGGGGATCAAAAGAAACGCAGCATTCCGGTGCTGCCATGGATGCGAGACCCTTTAGACCTTACTCTCTTCCAACAACTTCCCCTCCATTCCCTCCCTTCCCTCCACCCTAAGTTGAAATTATCACTAGAAAACATGGGGATTTCCAACCTGTTCCCGGTGCAAGTAGCGGTCTGGCAAGAAACCGTTGGGCCTGGGAAATTCCACCGAGACCTTTGTGTTAATTCCCCCACCGGAAGTGGCAAGACCTTGGCCTATGCACTCCCCATTGTACAGTTGCTATCCACACGCGTTGTCACGTGCCTACGCGCATTGGTCGTTGTCCCGACACGTGACCTTGCCTTCCAGGTCAAGCGTGTCTTCGATGCCATTGCCTCGCCTCTCGGCCTGCGTGTGGGACTTGTTGCTGGTCAGTCTTCCTTTGTGGAGGAGATTTCGGAGCTGGTGTGCGCGCCGGAATGTGAGTTAGGAATTTCTTATGATCCAGAAGAGGTTTCCTTTCGTGTTCGGAGACAGTTGAGGAGTAAGGTGGATATATTGGTGGCAACCCCTGGAAGATTGATGGATCATATCAATACCACCAAAGGCTTCACACTTGAGCACCTTCAATATCTTGTGGTTGATGAGACGGATCGACTACTCCGTGAGGCCTACCAGTCATGGCTACCTGCTGTCCTTGAATTGGTGCAGTCAAATGATGATAACAATTTTGAACCAAGTGATTCCTTTTTACCTATAGGTGCGTTAACAACTAGAAGAAGATGTGGGGTTGAGAGGGGTTTCAAGGATAAGCCCTACCCTAGGCTGGCAAAGATTGTCCTCTCTGCAACAATAACTCAGGACCCAGGCAGGCTTGTTCAGCTTGAGTTGCATCACCCTTTATTCCTGAGAGCTGGGCCAATGCGTTATCGACTTCCAGAAAATCTGGAATCGTACAAATTGACCTGTGAAAGAAAGGTCAAACCCTTGTATTTGGTTGCCCTTTTAAAATCACTAGAAGGAGAAAAATGCATAATTTTTACAAAATCTGTGGAGTCTACCCATCGTCTCTGCAAATTGCTTAATTGTTTTGGAGATCTGAAAATTGATATGAAGGAGTATTCTGGTCTTCAACATCAACGTGTAAGAAGTAAGACACTGAATGATTTTCGGAAAGGCGAGTTTCAAGTGCTTGTATCTTCTGATGCAATGACTCGTGGAATGGATGTTGAAGGGGTACGAAATGTCATTAACTATGACATGCCCAAATACGTGAAGACCTATGTTCATCGGGCTGGTAGGACTGCCCGAGCTGGCCAGACTGGGCGTTGCTTCACATTGATGTCCAATGATGAGGTTCGACAATTTAAGAAGTTGATGCAAAAGGCCGAGGCTAGTTCTTGTCCCGAGCACAGTATCCAATCCAATTTGATTGAAGCACTTCACCCTACCTATGAATCAGCATTGAAAAAGTTCAAGGAGAAGATTTCTAAGGTAGGAAAGAAACCAAATGATTAG 1497 0.4643 MGDQKKRSIPVLPWMRDPLDLTLFQQLPLHSLPSLHPKLKLSLENMGISNLFPVQVAVWQETVGPGKFHRDLCVNSPTGSGKTLAYALPIVQLLSTRVVTCLRALVVVPTRDLAFQVKRVFDAIASPLGLRVGLVAGQSSFVEEISELVCAPECELGISYDPEEVSFRVRRQLRSKVDILVATPGRLMDHINTTKGFTLEHLQYLVVDETDRLLREAYQSWLPAVLELVQSNDDNNFEPSDSFLPIGALTTRRRCGVERGFKDKPYPRLAKIVLSATITQDPGRLVQLELHHPLFLRAGPMRYRLPENLESYKLTCERKVKPLYLVALLKSLEGEKCIIFTKSVESTHRLCKLLNCFGDLKIDMKEYSGLQHQRVRSKTLNDFRKGEFQVLVSSDAMTRGMDVEGVRNVINYDMPKYVKTYVHRAGRTARAGQTGRCFTLMSNDEVRQFKKLMQKAEASSCPEHSIQSNLIEALHPTYESALKKFKEKISKVGKKPND 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90824g00005 498 CDD SF2_C_DEAD 310 440 - -
Stsc90824g00005 498 Gene3D - 16 299 IPR027417 -
Stsc90824g00005 498 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 63 296 IPR014001 -
Stsc90824g00005 498 PANTHER RNA HELICASE 35 467 - -
Stsc90824g00005 498 SMART helicmild6 348 432 IPR001650 -
Stsc90824g00005 498 Pfam Helicase conserved C-terminal domain 321 432 IPR001650 -
Stsc90824g00005 498 Gene3D - 308 498 IPR027417 -
Stsc90824g00005 498 CDD DEADc_DDX51 43 296 - -
Stsc90824g00005 498 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 324 474 IPR001650 -
Stsc90824g00005 498 Pfam DEAD/DEAH box helicase 53 282 IPR011545 GO:0003676|GO:0005524
Stsc90824g00005 498 SMART ultradead3 47 312 IPR014001 -
Stsc90824g00005 498 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 103 454 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90824g00005 Stsc-Chr90824 11599 16889 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90824g00005 57 447 Eukaryotic Initiation Factors Gene Family AT3G13920 23.559 3.02e-25 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90824g00005 K14807 - qsa:O6P43_013012 700.279