Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90822g00006 ATGTTGGTCAAGCAGACAGTGAAAACCGAAATGCCGAACCTGAAACGGTGCAAGCTGGAAGAAGGAGAGGAAGCAGAGCATGATTCGGAGAGCTATGGTTGTTTCGGGAATCAGAAGAAGCGGAAGGTTAACGGATTATGCTCTCCCGATGCTGAAGATTTTAGCAGTGGTTCTGGCTCTTGGTGCAGCGAAGGATCGTATTGGAATGCTGGTTCTGAGGTTCAGTCCAATTCAAATTCTGTACAGTTGAACGGTAAAATGGCACCGCGTGGCGGCGGCGGCGATGGGACTCGGCCACCATTGTTGCGGTCTACACGCGGCCGCCATCAGTCCTTGCCATCGAGGTTCAGTGACTCGGTTCTTGATTCATGGAAGAACCGAGGAATCAAATTGGAGGACACGGATTCCAGCTTTGAGGATGATACAGAAGAAGAGATGAAGAAGGGTGATAATTATGGCGGTGATCTTGAAGTGAATGTAGAGATGGAAAAGAATGGTTTTGTTAAAACTGAGAGTAACAGTTCTGTGCTTAGTTTTGAGGGTGGTGTGGAGCATAAGGTTAAAACTACTGGGAATGGTGGTGAAAAGAGGAAAGAGGTTTACAGGCCAGAGGATTTCGCATTGGGCGATATAGTTTGGGCGAAGTGTGGGAAGAGATACCCTGCTTGGCCTGCTGTAGTGATTGATCCTATCTTGCAGGCTCCAAAATCCGTCCTCAGCTGCTGCATTCCTGGTGCTCTCTGCGTTATGTTCTTTGGCTTTTCGAAAAATGGGACCCAAAGGGACTATGCTTGGGTGAAGCAGGGAATGATATTCCCCTTCTCAGAGTACATGGAAAGATTCCAGGGTCAGACCCGGTTGTACAAGAGCAAACCAAGTGACTTTCGCATGGCACTGGAGGAAGCAATGCTGGCTGTAGACGGTCTTCTCAACTCACAGCTGGGAGTAGAGGAAGTAACTTATGTAAACGCTTATCCCAGTGGACTTGTAGAGGCCCCAACCATGCGAGTTGATGATGAATACTACTCTGAGGATCAAGATACACTATCTTGTGCCGGCTGTTATTTGATGTTGCCATGCAAAACAATGAAGAAGATTAAGGACCCAAGTGGTGCATCTCGATTTTATTGCAAACATTGCTTTAAGTTACAAAAATCAAAACAATATTGTGGCATTTGCAAAATGATTTGGCACCATTCACATGGTGGGAATTGGGTATGCTGTGATGGTTGTAATGTTTGGGTGCATGCTGAGTGCGATAAAATTTCCAGTGAACTTTTCAAGGATCTTGAAAAGACGGACTACTATTGCCCAGAATGCAAGGGAAATTTAAATCAGAAATTCCCGGTACCACAAACAAGCAAGTCAAAAAAGAAGTGTGTTGTGGAAAACAGATTGGTAGAGAATAGCCAAAAATCTGGCATTCCGGAGACGGTAGCAGTGGTGTGCAATGGCATGGAAGGACTATACTTCCCAAAGCTTCATTTAATTATGTGCAAGTGTAGTTCTTGTGGTTCAAGGAAGCAGACGCCAAGTGAATGGGAAAGGCATACAGGTAGCAGAGCCAAAAAATGGAAACATAGTGTGAAAGTGAAAGGAACGACACTCCCACTAGAAAAATGGATCACAGAAAACATTTCACAAGATGGAGTTCCACAGCAGTTAGATCAGCAGCAGGTGCTTAGCTTTTTGCAAGAAAATTATGAGCCTGTTCATGCAAAATGGACAACAGAAAGATGTGCAGTTTGTAGATGGGTTGAAGATTGGGATGATAATAAAATTATTATTTGTAACAGGTGCCAAATAGCAGTCCACCAAGAATGCTATGGGGCAAAGAATGTTCATGATTTTACTTCGTGGGTTTGTAGAGTATGTGAAACACCAGATGTTGAGAGAGACTGTTGCCTCTGTCCTGTAAAAGGTGGTGCTCTAAAACCAACTGATGTTGAGATGCTATGGGTTCATGTGACATGCGCTTGGTTTCAACCTCAAGTTGTTTTCCAAAATCATGAGGCCATGGAACCTGCGGTAGGAATACTGAGAATTCCTCCTAATACCTTTGTGAAGCAATGTGTGATCTGTAAACAAAGTCATGGTTCCTGTACGAGTTGTTGCAAGTGTGCTACTTATTTTCACGTGATGTGTGCTTCAAGAGCGGGATATAGCACAGAATTGCATTCTGTGGAGAAGAATGGGACACAAATAACAAAGAAGCTAATATACTGTGCAGTTCACAGGGTCCCAAATCCAGAATCTGTATTGGTTATACATACTCTCCTTGGGGTTTTCTCTCCCAGAACCTCTCTTCAAAATCCTAAGAGATGCTTCAGGGGGTCAAGGTTGGTTTCATCAAAGAATGTAGAGCTTATTCAATCTTCAACCTCTGAAGGTGACAAGATTGAGCCATTTTCTGCTGCAAGATGTCATGTATACCATAGATCCCTGAATAAGAAGGCTCAAGTACCAATAATTCACTTGCTGAAGGGACCCAGTCATCATTCTTTAAGTGCAATAACTCAGATGAACAGCTATAAGGAACGACTTCATTATTTACAGAAAATGGAAAAGCTTCGAGTTTGCTTTGGAAAATCGGGTATCCATGGATGGGGTCTTTTTGCTCGTAGAGATATACAAGAAGGAGAGATGGTTGTTGAGTATCGTGGTGAGCAGGTGAGGCGTAGTGTTGCTGATTTAAGGGAAGCAAGATACCGTGCAGAAGGGAAAGATTGCTATCTGTTCAAGATCAGTGAGGAAGTGGTAATTGATGCAACATACAAGGGCAATATAGCGCGGCTAATAAACCATTCTTGCATGCCAAATTGCTATGCAAGGATTATGAGTTTGGGTGACCAAGAGAGTCGGATTGTTCTCATTGCAAAGACGAATGTTTCTGCTGGCGAAGAATTAACGTATGATTACTTATTCGATCCAGATGAGCAGGATGAACTGAAAGTTCCTTGCCTTTGCAATGCCCCCAATTGTAGGAAATTTATGAATTAG 3000 0.4347 MLVKQTVKTEMPNLKRCKLEEGEEAEHDSESYGCFGNQKKRKVNGLCSPDAEDFSSGSGSWCSEGSYWNAGSEVQSNSNSVQLNGKMAPRGGGGDGTRPPLLRSTRGRHQSLPSRFSDSVLDSWKNRGIKLEDTDSSFEDDTEEEMKKGDNYGGDLEVNVEMEKNGFVKTESNSSVLSFEGGVEHKVKTTGNGGEKRKEVYRPEDFALGDIVWAKCGKRYPAWPAVVIDPILQAPKSVLSCCIPGALCVMFFGFSKNGTQRDYAWVKQGMIFPFSEYMERFQGQTRLYKSKPSDFRMALEEAMLAVDGLLNSQLGVEEVTYVNAYPSGLVEAPTMRVDDEYYSEDQDTLSCAGCYLMLPCKTMKKIKDPSGASRFYCKHCFKLQKSKQYCGICKMIWHHSHGGNWVCCDGCNVWVHAECDKISSELFKDLEKTDYYCPECKGNLNQKFPVPQTSKSKKKCVVENRLVENSQKSGIPETVAVVCNGMEGLYFPKLHLIMCKCSSCGSRKQTPSEWERHTGSRAKKWKHSVKVKGTTLPLEKWITENISQDGVPQQLDQQQVLSFLQENYEPVHAKWTTERCAVCRWVEDWDDNKIIICNRCQIAVHQECYGAKNVHDFTSWVCRVCETPDVERDCCLCPVKGGALKPTDVEMLWVHVTCAWFQPQVVFQNHEAMEPAVGILRIPPNTFVKQCVICKQSHGSCTSCCKCATYFHVMCASRAGYSTELHSVEKNGTQITKKLIYCAVHRVPNPESVLVIHTLLGVFSPRTSLQNPKRCFRGSRLVSSKNVELIQSSTSEGDKIEPFSAARCHVYHRSLNKKAQVPIIHLLKGPSHHSLSAITQMNSYKERLHYLQKMEKLRVCFGKSGIHGWGLFARRDIQEGEMVVEYRGEQVRRSVADLREARYRAEGKDCYLFKISEEVVIDATYKGNIARLINHSCMPNCYARIMSLGDQESRIVLIAKTNVSAGEELTYDYLFDPDEQDELKVPCLCNAPNCRKFMN 999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90822g00006 999 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 629 747 IPR013083 -
Stsc90822g00006 999 SUPERFAMILY Tudor/PWWP/MBT 199 312 - -
Stsc90822g00006 999 SMART PWWP_4 206 275 IPR000313 -
Stsc90822g00006 999 SUPERFAMILY SET domain 850 996 IPR046341 -
Stsc90822g00006 999 FunFam Histone-lysine N-methyltransferase 629 748 - -
Stsc90822g00006 999 CDD PHD_TCF19_like 390 440 - -
Stsc90822g00006 999 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 568 628 IPR013083 -
Stsc90822g00006 999 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 999 IPR025780 -
Stsc90822g00006 999 SMART PHD_3 690 746 IPR001965 -
Stsc90822g00006 999 SMART PHD_3 579 626 IPR001965 -
Stsc90822g00006 999 SMART PHD_3 389 441 IPR001965 -
Stsc90822g00006 999 FunFam Histone-lysine N-methyltransferase 832 999 - -
Stsc90822g00006 999 ProSitePatterns Zinc finger PHD-type signature. 580 625 IPR019786 -
Stsc90822g00006 999 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 381 447 IPR013083 -
Stsc90822g00006 999 Gene3D - 475 556 IPR010919 -
Stsc90822g00006 999 SMART PostSET_3 983 999 IPR003616 -
Stsc90822g00006 999 Gene3D - 195 312 - -
Stsc90822g00006 999 ProSiteProfiles Zinc finger PHD-type profile. 577 628 IPR019787 -
Stsc90822g00006 999 CDD PWWP_AtATX3-like 209 309 - -
Stsc90822g00006 999 SUPERFAMILY SAND domain-like 477 537 IPR010919 -
Stsc90822g00006 999 MobiDBLite consensus disorder prediction 73 115 - -
Stsc90822g00006 999 Pfam PWWP domain 209 305 IPR000313 -
Stsc90822g00006 999 ProSiteProfiles SET domain profile. 857 974 IPR001214 GO:0005515
Stsc90822g00006 999 ProSiteProfiles Zinc finger PHD-type profile. 387 443 IPR019787 -
Stsc90822g00006 999 ProSiteProfiles Extended PHD (ePHD) domain profile. 631 746 IPR034732 -
Stsc90822g00006 999 MobiDBLite consensus disorder prediction 132 154 - -
Stsc90822g00006 999 PANTHER PHD FINGER PROTEINS 11 976 - -
Stsc90822g00006 999 Pfam PHD-finger 592 626 - -
Stsc90822g00006 999 ProSiteProfiles PWWP domain profile. 208 277 IPR000313 -
Stsc90822g00006 999 SMART set_7 857 980 IPR001214 GO:0005515
Stsc90822g00006 999 SUPERFAMILY FYVE/PHD zinc finger 387 446 IPR011011 -
Stsc90822g00006 999 Gene3D SET domain 828 999 IPR046341 -
Stsc90822g00006 999 CDD SET_SETD1-like 846 995 - -
Stsc90822g00006 999 Pfam PHD-finger 389 441 IPR019787 -
Stsc90822g00006 999 Pfam SET domain 868 973 IPR001214 GO:0005515
Stsc90822g00006 999 CDD PHD_ATX3_4_5_like 579 625 IPR042011 -
Stsc90822g00006 999 ProSiteProfiles Post-SET domain profile. 983 999 IPR003616 -
Stsc90822g00006 999 Pfam PHD-zinc-finger like domain 633 745 - -
Stsc90822g00006 999 SUPERFAMILY FYVE/PHD zinc finger 577 642 IPR011011 -
Stsc90822g00006 999 Pfam SAND domain 477 544 IPR000770 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90822g00006 Stsc-Chr90822 61708 68492 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90822g00006 580 732 C2H2 Transcription Factor Family AT3G14740 33.750 2.43e-19 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Stsc90822g00006 zf-HC5HC2H_2 2.3e-27 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90822g00006 - - gmx:100793624 1527.69