Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90822g00003 ATGGGAATCCTAATGAAGAAGATCCTTTCTCTTTTCTTCATCTACCCTGTCATATTAGCTTCCAATTACTGCGAATTTTCTTGGTGTGAAGATAGGATCCTCATTCGTTTCCCCTTTCAGCTACAAAGTAATCAGCTTCAACGTCCTTATTGTGGCTACCCTGGTTTTAAATTAATCTGTATGAATGATACCAAAACAGTTCTAGATCTTCCATTCTCTGGAGAATTCTATGTCCGCAACATAAACTATCTCACACAGCAGATACAAGTCTATGACCCTGATCACTGCCTTCCAAAACGTCTTCTAAGCCTCAACCTTTCAGGTACTCCCTTCGTCGCCACGTTGAGTCGCAACTACACTTTCTTAAGCTGCAAGTCTAGCAACGCAATGTCGCGGTCCGTTCCCATTGATTGCCTTAGCAATTCAACATATTTTGTATCTGCTGTGCCTTCAGTGGACTTGGCCAATAATTCATTGCCAGATTCATGCAAAGTTATTGGAAGGCTTTCATTTCCGTTTTCAAGCACAACATTTGTGAGGAATATTGGTGATGATCTTACCCAAGATCTTCAATTAACATGGAATAAACCTGATTGCAGAGTGTGTGAATCACAAGGACTATTGTGTGGATTTGAAAGCAATACCAGTGATAGAATTAGTTGCTCCCCTGATTACCATTCAGGTGGCACATCTAGGGGACTTCTAGCTTTCAGAATCATCACATTATCCATAGTTGGACCAGCTTGTACCTTTGCAATTGTGTTAGCATGTTGTGTGTGTCACAGAGACAGAGTCTCCAATGCTGCTGCTGCAAGGAGAGCACAACAATTAGCAGCAATAACACCACACCCTCCTGAACCTCCCATTATTACAACTCTGGGTTTGGATGAAACTACAATTGAGTCTTATGAGAAGCTTGTTCTTGGTGAGAGTAAGAGGGTGCCAGGACCTAATGATGGAAGTTGCTGGATATGCTTGGCAGAGTATAATTCAAAAGAGACAATTAGATGTATCCCTGAATGCAAACATTGCTTCCATTCTGATTGCATTGATGAGTGGCTTAGAATGAATTCCACATGCCCAGTTTGCAGGAACACTCCAACTCCATCCCCTTCTCATGATGTTATGTCTAATACTGCACCTTGA 1146 0.4171 MGILMKKILSLFFIYPVILASNYCEFSWCEDRILIRFPFQLQSNQLQRPYCGYPGFKLICMNDTKTVLDLPFSGEFYVRNINYLTQQIQVYDPDHCLPKRLLSLNLSGTPFVATLSRNYTFLSCKSSNAMSRSVPIDCLSNSTYFVSAVPSVDLANNSLPDSCKVIGRLSFPFSSTTFVRNIGDDLTQDLQLTWNKPDCRVCESQGLLCGFESNTSDRISCSPDYHSGGTSRGLLAFRIITLSIVGPACTFAIVLACCVCHRDRVSNAAAARRAQQLAAITPHPPEPPIITTLGLDETTIESYEKLVLGESKRVPGPNDGSCWICLAEYNSKETIRCIPECKHCFHSDCIDEWLRMNSTCPVCRNTPTPSPSHDVMSNTAP 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90822g00003 381 CDD RING-H2_EL5-like 321 364 - -
Stsc90822g00003 381 ProSiteProfiles Zinc finger RING-type profile. 322 364 IPR001841 -
Stsc90822g00003 381 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 7 367 IPR046948 -
Stsc90822g00003 381 Pfam Ring finger domain 321 364 IPR001841 -
Stsc90822g00003 381 SMART ring_2 322 363 IPR001841 -
Stsc90822g00003 381 Pfam Wall-associated receptor kinase galacturonan-binding 24 92 IPR025287 GO:0030247
Stsc90822g00003 381 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 290 369 IPR013083 -
Stsc90822g00003 381 Pfam Wall-associated receptor kinase C-terminal 147 221 IPR032872 -
Stsc90822g00003 381 SUPERFAMILY RING/U-box 315 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90822g00003 Stsc-Chr90822 53651 56242 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90822g00003 26 369 C3H Transcription Factor Family AT2G25410 43.266 1.64e-89 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90822g00003 - - aprc:113851081 480.715