Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90822g00002 ATGGCAATTTCTGTGGACCCTTTATTCCTCTACATTCCTGTGATAAATGAAGAGAAGAAATGCCTGAGTTTGGATAAGAGATTGAAGATTGTTGCTTGTGTTCTTAGAACATTCTTTGATGTTTTCTACATTGTTAGGATCATGTTTCAGTTTAGAACAGGGTTTATTGCACCTTCTTCACGTGTGTTTGGAAGGGGTGAGTTGATTCATGACACAAAAGCCATTGTCATGAGATATTTGTGCTCAGATTTCATCATTGATATTCTATCAATTCTTCCACTTCCTCAGGTGTTCATCTTAGCTATCAGGTCATTTCCATGTGAAGTAAAGAACATGTTGAAGTTCACAATTCTAGCTCAATATGTGCCAAGACTTGTGAGGCTGTTTCTTTTGTTCAAAGAAGTAACAAGCTCTTCTGGCATACTCACTGAGACAGCATGGGCTAGTGCTGCCTATAATCTTTTTCTCTACATGCTAGCAAGTCATGTAGTTGGAGCTTTCTGGTATCTGTTCTCAATAGAAGCAGAGCTTAGGTGTTGGCATAGGGTGCTAAAATCTCAAAACTACTCACATATAGACCTTGGCTGCAGTAAGATGCAAAGGAATCCAGAATTTCAATTAATTTTGAGCAGGAATGATTCTTGCCCTCTTCTGAGCCCTGATGACATGAAAGATCCAAGTGTTTTCAATTTTGGAATATTCACTTCAGCTCTAATGGCTCATATTGAGGGATCAAGTACAGATTTTCCTCAGAAGTTCGTCTTCTGCTTTTGGTGGGGTTTTCGCAACTTAAGTTCTCTTGGACAAAACCTCTTGTGTAGTACTTACATTGGGGAGAATATATTTGCTATCTTCATTGCCATTTTTGGATTGGTTCTATTCTCATCACTCATTGGAAACATGCAGAAATATCTACAATCCACAAATGTAAGAGTTGAAGAGATGAGAGTCAAAAGGAGGGATGCAGAGCGGTGGATGTCGCACCGGATGCTACCGGATTCCTTGAAGGAAAGGATCAGAAGGTATTTACAGTACAAATGGCAACAAAATAGGGGTGTTGAGGAGGAAGCATTGATCAAAAACCTCCCTAAAGATCTTAGAAGGGACATTAGGCGTCATCTTTGCTTGAAATTACTTACAAGAGTGCCAATGTTTGAGAACATGAACAAACAATTGTTGGATGCAATGTGTAATACCCTGAAGCCAGTCCTTTACACTGAGAAGAGCTACATTGTTTGCGAACAAGATCCGGTCGACGAAATGCTCTTCATTATGCGTGGAAACCTCCGAACCATCACTACAAATGGCGGCAGAACAGGTTTCTTCAACTGCTTTGAGCTCAAACCTGGTGACTTCTGTGGAGAAGAGCTTCTGACATGGGCCTTGGATCCAAATTCCCCACCAAATCTACCAATTTCAACAAGAACTGTTGAAACCATATCTGAAGTTGAAGCTTTTGCGCTCACTGCTGATGACTTGAAGTGTGTTGCTTCGCAGTTTCGTCGAATTATAACCAGCAAACAACTCCAGCATACTTTCAGATTCTACTCCTTACAATGGAAGACATGGGCAGCATGTTTCATCCAAGCAGCATGGCGCAGATACCGGAAGAAGAAAGCACTGAAGGCATTATATGAATCTGAAGAGGTTCAATCTTTTGGAATTGAGGATGGATATAGCAACAGTTGCTCATCATCATCACCAAGCTTTGTTGCCACANNNNNNNNNNACCAATGCTCTTAG 1743 0.405 MAISVDPLFLYIPVINEEKKCLSLDKRLKIVACVLRTFFDVFYIVRIMFQFRTGFIAPSSRVFGRGELIHDTKAIVMRYLCSDFIIDILSILPLPQVFILAIRSFPCEVKNMLKFTILAQYVPRLVRLFLLFKEVTSSSGILTETAWASAAYNLFLYMLASHVVGAFWYLFSIEAELRCWHRVLKSQNYSHIDLGCSKMQRNPEFQLILSRNDSCPLLSPDDMKDPSVFNFGIFTSALMAHIEGSSTDFPQKFVFCFWWGFRNLSSLGQNLLCSTYIGENIFAIFIAIFGLVLFSSLIGNMQKYLQSTNVRVEEMRVKRRDAERWMSHRMLPDSLKERIRRYLQYKWQQNRGVEEEALIKNLPKDLRRDIRRHLCLKLLTRVPMFENMNKQLLDAMCNTLKPVLYTEKSYIVCEQDPVDEMLFIMRGNLRTITTNGGRTGFFNCFELKPGDFCGEELLTWALDPNSPPNLPISTRTVETISEVEAFALTADDLKCVASQFRRIITSKQLQHTFRFYSLQWKTWAACFIQAAWRRYRKKKALKALYESEEVQSFGIEDGYSNSCSSSSPSFVATXXXXQCS 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90822g00002 580 FunFam Cyclic nucleotide-gated ion channel 1 311 375 - -
Stsc90822g00002 580 FunFam Cyclic nucleotide-gated ion channel 1 382 500 - -
Stsc90822g00002 580 Gene3D - 9 308 - -
Stsc90822g00002 580 ProSiteProfiles cAMP/cGMP binding motif profile. 384 467 IPR000595 -
Stsc90822g00002 580 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 1 548 - -
Stsc90822g00002 580 Gene3D Jelly Rolls 382 502 IPR014710 -
Stsc90822g00002 580 Pfam Ion transport protein 26 312 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Stsc90822g00002 580 SUPERFAMILY Voltage-gated potassium channels 6 306 - -
Stsc90822g00002 580 Gene3D Helix hairpin bin 311 375 - -
Stsc90822g00002 580 CDD CAP_ED 384 516 IPR000595 -
Stsc90822g00002 580 SMART cnmp_10 384 515 IPR000595 -
Stsc90822g00002 580 Pfam Cyclic nucleotide-binding domain 404 494 IPR000595 -
Stsc90822g00002 580 SUPERFAMILY cAMP-binding domain-like 313 500 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90822g00002 Stsc-Chr90822 28387 33716 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90822g00002 1 573 Ion Channels AT5G53130 63.966 0.0 725
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90822g00002 K05391 - ahf:112708046 868.226