Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90821g00003 ATGTCCAGAATTGTGTTATTGTTCCTCTTCTATGTCCTTATTGTGCAACTCTCTTCACTCCAATCAGCCCAAGCTGATGAGAAGAATGAAGAAGCAAATGCACTCTTAAACTGGAAGGCCACCCTTGACAACGACAGCCAGCTTATGTTGTCATCTTGGAGCAACAGAAGCAGTGCATGCACATGGCGAGGAATTTATTGTGATGATAAGTCAAAGTCTTCCGTCACAAGAATCAATCTTAGAAACTTGGGACTCAAAGGTACACTCCACACTCTCACCTTCTCCTCATTCCCCAACCTCCTTACCATAGATATATACAACAACTTGTTCCATGGAACCATTCCCCCACAGATTGCTAACTTGTCCAGAGTTAATAGCTTGAATTTGTCTCTAAATCTTTTTGATGGTTCTATCCCTAAAGAATTGTGGACATTGAGCAGTTTACAGAGGCTTGATCTTTACCAAAATCATATAAGTGGCCAAATCCCTGACTCTATAGCAAATTTGGCCAACTTAACATATCTAGATTTTGGATTCAACAATCTTTCTGGCCAAATTCCCCCTGGGATTGGAAAATTGATCAACCTAGAGAAACTTTTTCTTACTCATAATCATCTTTCCGGTTCCATTCCCAAGGAAGCTGGAACCATGGCAAGCCTTCAAGTACTTGATGTCTCAGACAACAAGCTCTTTGGAGCTATCCCTTCTATCATTGCTAACTTGAGCAACTTGCAACAGCTTCTTCTTTCTAATAACACACTCTCTGGCCAAATCCCACCCTTTATCTGGAACATGTCTAACCTCACCTTATTAATGCTTAATGCCAATCAACTTTTTGGATCCATCCCTACTTCCATAGAAAACTTGGCCAATTTAGATTCCCTTGCACTTGATACCAACCACCTTTCTGGACCTATTCCTTCCACAATTGGAAACTTGACAAAGCTCTTCCAATTATACCTGGGAGATAACAATTTTTCTGGACCAATTCCCGCCTCTTTAGGTAATCTCATCAATTTGGAATTCTTAAGCATCCAATCTAACAAACTCTATGGAACTATTCCTGACACCATTGGAAACTTGAAAGACCTCGTTGTGCTAGACTTGTCAACAAATAACCTTCATGGCACAATTCCACAGGGCATTAATAACTTGACAAGCTTGCAGTACTTTATAGTGGCCGATAACAATTTCATCGGCCGTTTACCACCTCAGATCTGCTCAGGTGGACCACTCTCAGCCATCAATGTTGAAGACAACCATTTCACTGGTCCAATTCCAACAAGCTTGAAGAATTGCTCTAACATTGCTAGAATCACATTTCAGCAAAATCAGTTGGAAGGTGACATTGCAGAAATTTTTGGAATATATCCAAATTTGGTACATATTGATCTTAGTGGTAACAAGTTTTATGGTCAAATTTCACCAAATTGGGGGAAGTGCCATAAACTTCAGAACTTTCTCTTGTCCAACAATAATATTTCTGGTGTTATCCCACCAGAAATTGTTGGGGCTACTAAGCTGGGTAGGCTTTATCTTTCTTCAAACCAACTGAATGGAAAGATTCCAAAAGAACTGGGGAATATGAAAAACTTGCAGGAACTCGAGATCAGTAACAATCATCTCTCAGGAAACATTCCAACCGAATTAGGATCGTTGCAGGATCTGACAATCTTGCACCTAGCAGGAAATGAGTTGAGTGGCAACATACCAAGACAAGTTATGCAATTACCGAAATTGTCGAAATTGAACTTGAGCATGAATAGACTAGTGGGAAGCATCCCCTCCAGCGTTGGCTCGTTGCAACCTCTTTCTTCCCTTGATCTTAGCAGCAATTCGTTGAATGGAAGTATACCAGAGTGGCTTGGAGATTTGAAGTCGTTGAACTTGTTGAGCCTCTCACACAATGATCTCTCTGGCAAGATTCCATCAAGTTTTGATGGCATGTCAGCATTGATTTCTGTCAACATATCATACAACCAGTTAGAAGGGCCACTTCCAAACAATAAAGCCTTTCTCAATGCTTCAATTGATTCCATGGAAAAAAACAAAGCCTTGTGTTCTAATAATGTCACTGCCGCTGGCTTGGAGCGATGCTCAAAGAAGCGGCATAGCAAGAAGATGGTATTGTTTCTTATCTTCGGAGCACTAGCAGTAGCACTAGCACTTTGTGTGGTGGGTGTTTCCATTTATCTTCTTTGTAGAAGAGGCAGAAAGAAAGAAGACATGGCTAAAGAAGTGCTATCAGAAGAACACTTTTCCATATGGAGCCATGATGGGAAAATGGCATTTGAAACTATCATCAAAGCTACCAACAATTTTGATGACAACTATCTCATTGGAATTGGAGGGCAAGGATCCATTTACAAGGCTGAGTTGCCTTCAGGTATGGTTGTTGCTGTCAAGAAGCTTCACGAGAAGACTGCTATTGATGAGGAGGCATACAATGTGAAAGCATTTGAGAATGAAATCAAAGCATTGACAGAAATGAAGCACCGCAACATCATAAAGCTATATGGATTTTGCCAGCATTCACGGTTCTCATTTTTGGTTTACAAGTTCTTGGAAGGTGGCAGCTTGAATCATGTGCTGAGACATGAAGCACAAGCAAGTGAATTTGATTGGGAGAAGAGGGTGAATGTGGTTAAAGGAGTTGCAAATGCTTTGTCATATATGCATCATGATTGCTTGCCTCCTATAGTTCATCGCGACATATCGAGCAAGAATGTTCTTCTGGATTCAGAATATGAAGCTCATGTCTCTGATTTTGGGACAGCTAAGTTTCTTAAGCCGGATTCAAGTTGGACAACACTTGTAGTCACCTATGGCTATGGAGCTCCTGAGCTAGCTCAGACCATGGAAGTGACAGAGAAAAGTGATGTATATAGCTTTGGAGTGCTTTGTTTGGAGATCATCATGGGAAAGCATCCTGGAGATCTGATAAGCTCATTGTTGTCACCATCAACAGCATCAATAACATACAATTTGTTATTGGTTGATGTCATTGATCAGAGGCCTCCTCATCCTAAGAATTCAGTTGCTGGGGAGATCATGTGGATCACAAAATGGGCACTTGAGTGCTTGAGACAAAGTCCACAATCTAGACCAAGCATGTATCAAGTTTCTAAAGAGATTATGATGGGAAAGTCACCATTAGCCAATGACCAATTTCCTATGATCAGAATTGGGCAACTCATTCAAGAATAA 3207 0.4075 MSRIVLLFLFYVLIVQLSSLQSAQADEKNEEANALLNWKATLDNDSQLMLSSWSNRSSACTWRGIYCDDKSKSSVTRINLRNLGLKGTLHTLTFSSFPNLLTIDIYNNLFHGTIPPQIANLSRVNSLNLSLNLFDGSIPKELWTLSSLQRLDLYQNHISGQIPDSIANLANLTYLDFGFNNLSGQIPPGIGKLINLEKLFLTHNHLSGSIPKEAGTMASLQVLDVSDNKLFGAIPSIIANLSNLQQLLLSNNTLSGQIPPFIWNMSNLTLLMLNANQLFGSIPTSIENLANLDSLALDTNHLSGPIPSTIGNLTKLFQLYLGDNNFSGPIPASLGNLINLEFLSIQSNKLYGTIPDTIGNLKDLVVLDLSTNNLHGTIPQGINNLTSLQYFIVADNNFIGRLPPQICSGGPLSAINVEDNHFTGPIPTSLKNCSNIARITFQQNQLEGDIAEIFGIYPNLVHIDLSGNKFYGQISPNWGKCHKLQNFLLSNNNISGVIPPEIVGATKLGRLYLSSNQLNGKIPKELGNMKNLQELEISNNHLSGNIPTELGSLQDLTILHLAGNELSGNIPRQVMQLPKLSKLNLSMNRLVGSIPSSVGSLQPLSSLDLSSNSLNGSIPEWLGDLKSLNLLSLSHNDLSGKIPSSFDGMSALISVNISYNQLEGPLPNNKAFLNASIDSMEKNKALCSNNVTAAGLERCSKKRHSKKMVLFLIFGALAVALALCVVGVSIYLLCRRGRKKEDMAKEVLSEEHFSIWSHDGKMAFETIIKATNNFDDNYLIGIGGQGSIYKAELPSGMVVAVKKLHEKTAIDEEAYNVKAFENEIKALTEMKHRNIIKLYGFCQHSRFSFLVYKFLEGGSLNHVLRHEAQASEFDWEKRVNVVKGVANALSYMHHDCLPPIVHRDISSKNVLLDSEYEAHVSDFGTAKFLKPDSSWTTLVVTYGYGAPELAQTMEVTEKSDVYSFGVLCLEIIMGKHPGDLISSLLSPSTASITYNLLLVDVIDQRPPHPKNSVAGEIMWITKWALECLRQSPQSRPSMYQVSKEIMMGKSPLANDQFPMIRIGQLIQE 1068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90821g00003 1068 Gene3D Ribonuclease Inhibitor 407 708 IPR032675 -
Stsc90821g00003 1068 Gene3D Ribonuclease Inhibitor 185 237 IPR032675 -
Stsc90821g00003 1068 Pfam Protein kinase domain 777 1043 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90821g00003 1068 FunFam Nuclear pore complex protein NUP107 28 187 - -
Stsc90821g00003 1068 SUPERFAMILY L domain-like 56 230 - -
Stsc90821g00003 1068 FunFam Leucine-rich repeat receptor protein kinase MSP1 737 854 - -
Stsc90821g00003 1068 SMART serkin_6 774 1047 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90821g00003 1068 Gene3D Transferase(Phosphotransferase) domain 1 855 1056 - -
Stsc90821g00003 1068 ProSitePatterns Tyrosine protein kinases specific active-site signature. 900 912 IPR008266 GO:0004672|GO:0006468
Stsc90821g00003 1068 Gene3D Ribonuclease Inhibitor 27 184 IPR032675 -
Stsc90821g00003 1068 Gene3D Ribonuclease Inhibitor 238 406 IPR032675 -
Stsc90821g00003 1068 ProSiteProfiles Protein kinase domain profile. 774 1047 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90821g00003 1068 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 414 1046 - -
Stsc90821g00003 1068 SMART LRR_sd22_2 361 384 - -
Stsc90821g00003 1068 SMART LRR_sd22_2 169 198 - -
Stsc90821g00003 1068 SMART LRR_sd22_2 217 243 - -
Stsc90821g00003 1068 SMART LRR_sd22_2 145 168 - -
Stsc90821g00003 1068 SMART LRR_sd22_2 625 651 - -
Stsc90821g00003 1068 SMART LRR_sd22_2 529 548 - -
Stsc90821g00003 1068 SMART LRR_sd22_2 265 291 - -
Stsc90821g00003 1068 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 389 703 - -
Stsc90821g00003 1068 SUPERFAMILY RNI-like 353 664 - -
Stsc90821g00003 1068 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 188 281 - -
Stsc90821g00003 1068 SMART LRR_typ_2 193 217 IPR003591 -
Stsc90821g00003 1068 SMART LRR_typ_2 145 168 IPR003591 -
Stsc90821g00003 1068 SMART LRR_typ_2 169 192 IPR003591 -
Stsc90821g00003 1068 SMART LRR_typ_2 577 601 IPR003591 -
Stsc90821g00003 1068 SMART LRR_typ_2 337 361 IPR003591 -
Stsc90821g00003 1068 SMART LRR_typ_2 385 409 IPR003591 -
Stsc90821g00003 1068 SMART LRR_typ_2 241 265 IPR003591 -
Stsc90821g00003 1068 SMART LRR_typ_2 625 648 IPR003591 -
Stsc90821g00003 1068 SMART LRR_typ_2 289 313 IPR003591 -
Stsc90821g00003 1068 SMART LRR_typ_2 529 553 IPR003591 -
Stsc90821g00003 1068 SUPERFAMILY Protein kinase-like (PK-like) 760 1043 IPR011009 -
Stsc90821g00003 1068 Pfam Leucine rich repeat 483 542 IPR001611 GO:0005515
Stsc90821g00003 1068 Pfam Leucine rich repeat 339 398 IPR001611 GO:0005515
Stsc90821g00003 1068 Pfam Leucine rich repeat 604 662 IPR001611 GO:0005515
Stsc90821g00003 1068 SUPERFAMILY L domain-like 177 449 - -
Stsc90821g00003 1068 FunFam Probable leucine-rich repeat receptor-like protein kinase At5g63930 282 380 - -
Stsc90821g00003 1068 FunFam MDIS1-interacting receptor like kinase 2 855 1051 - -
Stsc90821g00003 1068 Coils Coil 810 830 - -
Stsc90821g00003 1068 Gene3D Phosphorylase Kinase; domain 1 735 854 - -
Stsc90821g00003 1068 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
Stsc90821g00003 1068 PRINTS Leucine-rich repeat signature 625 638 - -
Stsc90821g00003 1068 PRINTS Leucine-rich repeat signature 604 617 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90821g00003 Stsc-Chr90821 9334 12762 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90821g00003 30 947 Receptor kinase-like Gene Family AT4G08850 45.757 0.0 751
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc90821g00003 Pkinase 1.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90821g00003 - - aip:107635237 1277.31