Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90821g00001 CATCGTGACATATCAAGCAAGAACATTCTTTTGGACTCAGAATATGAGGCTCATGTCTCTGACTTTGGGACTGCTAAGTTTTTGAAGCCAGATTCAAATTGGACAACACTTGCAGTCACCTATGGTTATGCAGCTCCAGAGCTAGCACAGACAATGGAAGTCACAGAGAAGTGTGATGTATATAGCTTTGGAGTGCTTTGTTTGGAGATCATCATGGGAAAGCATCCAGGAGATCTGATCAACTCATTTCTGTCACCATCAACAGCATCAATAACATACAATTTGTTATTGGTTGATGTCATTGATCAGAGGCCTCCTCATCCTAAGAATTCAGTTGCTGGGGAAATCATGTGGATCACAAAGTGGGCACTTGAGTGCTTGAGCCACAATCCAAAGTCAAGACCAAGCATGCATCAAGTGGCCAAAGAGATTATGATGGGAAAAGCACCATTAGCTGAACAATTTGGTATAATCAGAATTGGGCAACTAAATGAAGAATGGGAAACTCCACTAATGTGA 519 0.4162 HRDISSKNILLDSEYEAHVSDFGTAKFLKPDSNWTTLAVTYGYAAPELAQTMEVTEKCDVYSFGVLCLEIIMGKHPGDLINSFLSPSTASITYNLLLVDVIDQRPPHPKNSVAGEIMWITKWALECLSHNPKSRPSMHQVAKEIMMGKAPLAEQFGIIRIGQLNEEWETPLM 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90821g00001 172 ProSiteProfiles Protein kinase domain profile. 1 146 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90821g00001 172 SUPERFAMILY Protein kinase-like (PK-like) 1 146 IPR011009 -
Stsc90821g00001 172 PANTHER LEUCINE RICH REPEAT KINASE 2 1 149 - -
Stsc90821g00001 172 Gene3D Transferase(Phosphotransferase) domain 1 1 154 - -
Stsc90821g00001 172 Pfam Protein kinase domain 1 143 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90821g00001 Stsc-Chr90821 1 714 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90821g00001 1 144 Receptor kinase-like Gene Family AT1G16150 39.073 6.34e-28 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc90821g00001 Pkinase 1.8e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90821g00001 - - aip:107635237 299.671