Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90820g00001 ATGAACAAACTCGATCAATCATCATTTGATGAGTACCTATCCACGTGTTCTTCTGAAGCGAGCTCATCCAACAACAAAAATCCGTTGCGGCCAACCACCACCGACTATGACCACCCCACACCTTTGGCATCATTGAGGCCAAAGAAGCGTGCAGGGAGAAGAATCTTTAAGGAAACGAGGCACCCAGTGTATCGAGGGGTGAGGAGGAGGAACAACAATAGATGGGTCTGCGAGGTTCGCGTTCCCAATAACAAGTCCAAACGGATATGGCTGGGAACCTACGCCACACCTGAGATGGCTGCCCGTGCGTACGACGTGGCCGCCCTCGCACTACGCGGGAAGTCTGCCTGCCTTAATTTTGCAGACTCTGCGCAGCGACTACTCCCCTTGCTTCCAGCTTCTACTGATGGCGCAGAAGAGATAAGGAGAGTGGCCGCGGAGGCTGCAAAGACAGTTACAGTAGCTCTGGACGGTTATAATAATAATAAATGCTGTCTGGGAAGTGTGGACAATGCAGTTACTGAGTACGAAGTTTGTAGCCGTGAGAGAGTGGTGGAAGAAGATGTAAAGAAGGATTTGATTGTTGATATTAATAATGATGATGATCATTACATGCATGATTGGGTTCGGAGCATGACGGAGGAGCCTTTACGATCACCTCCTCCATTTTTTAGATACGATTTTGGCAGTAGCAGGGATTGGAATGATACAGAGTTTGATGCTGATGTGTCATTGTGGAGCTTTTCCATTTGA 753 0.4821 MNKLDQSSFDEYLSTCSSEASSSNNKNPLRPTTTDYDHPTPLASLRPKKRAGRRIFKETRHPVYRGVRRRNNNRWVCEVRVPNNKSKRIWLGTYATPEMAARAYDVAALALRGKSACLNFADSAQRLLPLLPASTDGAEEIRRVAAEAAKTVTVALDGYNNNKCCLGSVDNAVTEYEVCSRERVVEEDVKKDLIVDINNDDDHYMHDWVRSMTEEPLRSPPPFFRYDFGSSRDWNDTEFDADVSLWSFSI 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90820g00001 250 CDD AP2 64 123 IPR001471 GO:0003700|GO:0006355
Stsc90820g00001 250 PRINTS Ethylene responsive element binding protein signature 64 75 IPR001471 GO:0003700|GO:0006355
Stsc90820g00001 250 PRINTS Ethylene responsive element binding protein signature 87 103 IPR001471 GO:0003700|GO:0006355
Stsc90820g00001 250 Gene3D AP2/ERF domain 63 122 IPR036955 GO:0003700|GO:0006355
Stsc90820g00001 250 ProSiteProfiles AP2/ERF domain profile. 63 121 IPR001471 GO:0003700|GO:0006355
Stsc90820g00001 250 MobiDBLite consensus disorder prediction 15 52 - -
Stsc90820g00001 250 SUPERFAMILY DNA-binding domain 63 123 IPR016177 GO:0003677
Stsc90820g00001 250 SMART rav1_2 63 127 IPR001471 GO:0003700|GO:0006355
Stsc90820g00001 250 FunFam Ethylene-responsive transcription factor 2 62 122 - -
Stsc90820g00001 250 MobiDBLite consensus disorder prediction 15 39 - -
Stsc90820g00001 250 Pfam AP2 domain 62 113 IPR001471 GO:0003700|GO:0006355
Stsc90820g00001 250 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 15 248 IPR045277 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90820g00001 Stsc-Chr90820 4345 5302 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90820g00001 42 248 AP2-EREBP Transcription Factor Family AT1G12610 47.368 2.24e-47 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc90820g00001 AP2 2.3e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90820g00001 - - pvu:PHAVU_003G212800g 196.438