Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90819g00015 ATGGCAGCAAGAAGAGATCAGAGCAGGTGGGCTAACCTGCCACCTGAGTTGCTGATAGACATAATCAAGAGAGTTGAAGTAAGTGAAACTTCATGGCCTTGTAGAAGAGCTGTTGTGGCATGTGCCTCAGTTTGTAGGACTTGGAGACACATAACAAAGGCTCTTGTTAACACACCAGAACAGTGTGGTTGGATCACTTTCCCTATCTCACTCAAGCAGCCTGGTCCAAGAGACACTCCCATACAATGTTTTATTAAGAGAGAAAGGGTATCTTCAACATATCGTTTATACCTTGGTCTCAGCCCTGCTCTTTCTGGTGATATGAGCAAGCTGCTACTTGCTGCAAAGAAGATCAGAAAGGCAACATGTACCGAATTCTTGATATCGTTGGTTGCGGACGATTTCTCGCGATCTAGCACTACCTACATCGGAAAACTAAGGTCTAATTTTCTTGGAACCAAGTTCATGATCTTGGACGGACAGCCTTCACTCGATCCTTGTTCGATTCAATCGAGTTCCAAATCGCAGCAACGAGTTCACTCGAAGCAGGTTCTTCCAAGGGCTGCTTCTTCTTCTTGTGCAAACTATAATGTGGCAACAGTCTCTTATGAACTCAATGTTCTTCGGACGAGAGGGCCAAGGCGAATGCGATGTTCAATGCACTTAATCCCTGTATCAGCAATCCAAGAAGGAGGAACTGCTCCAACTCCTTTGAATTTCACAAACTTCTTCAATGATCTTGAATGTACTATGTCTCTTTCGAAATCAAAGAATCCGGGAACTGAAACCGGATCAACTAGCACTATCACTACTCCAGATTCAAGCCATTGTTCAAGAGAATCACTTGTTTTGAGAAACAAGGCTCCTAGATGGCATGAACAACTTCAGTGTTGGTGCTTGAATTTCAAAGGCCGAGTCACGGTTGCTTCTGTTAAGAACTTCCAGCTTGTTGCTGCTGTAGAGCCTTCTCAAAATAATGTTTCGGCCGTGGATCAAGAGAAAGTCATACTGCAATTCGGAAAGATTGGGAAGGACATATTCACCATGGATTACCGGTATCCCCTTTCGGCCTTTCAAGCCTTCGCAATCTGTTTGAGCAGCTTTGACACCAAACCGGCTTGTGAATGA 1128 0.4433 MAARRDQSRWANLPPELLIDIIKRVEVSETSWPCRRAVVACASVCRTWRHITKALVNTPEQCGWITFPISLKQPGPRDTPIQCFIKRERVSSTYRLYLGLSPALSGDMSKLLLAAKKIRKATCTEFLISLVADDFSRSSTTYIGKLRSNFLGTKFMILDGQPSLDPCSIQSSSKSQQRVHSKQVLPRAASSSCANYNVATVSYELNVLRTRGPRRMRCSMHLIPVSAIQEGGTAPTPLNFTNFFNDLECTMSLSKSKNPGTETGSTSTITTPDSSHCSRESLVLRNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAVEPSQNNVSAVDQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90819g00015 375 CDD F-box_AtTLP-like 10 53 - -
Stsc90819g00015 375 SUPERFAMILY Tubby C-terminal domain-like 59 375 IPR025659 -
Stsc90819g00015 375 Gene3D - 4 57 - -
Stsc90819g00015 375 Pfam F-box domain 10 55 IPR001810 GO:0005515
Stsc90819g00015 375 Pfam Tub family 71 370 IPR000007 -
Stsc90819g00015 375 PRINTS Tubby superfamily signature 332 351 IPR000007 -
Stsc90819g00015 375 PRINTS Tubby superfamily signature 353 375 IPR000007 -
Stsc90819g00015 375 PRINTS Tubby superfamily signature 302 318 IPR000007 -
Stsc90819g00015 375 PRINTS Tubby superfamily signature 284 301 IPR000007 -
Stsc90819g00015 375 PRINTS Tubby superfamily signature 195 222 IPR000007 -
Stsc90819g00015 375 PRINTS Tubby superfamily signature 126 142 IPR000007 -
Stsc90819g00015 375 PRINTS Tubby superfamily signature 142 166 IPR000007 -
Stsc90819g00015 375 PANTHER TUBBY-RELATED 6 373 - -
Stsc90819g00015 375 Gene3D Tubby Protein; Chain A 69 375 IPR025659 -
Stsc90819g00015 375 SUPERFAMILY F-box domain 4 53 IPR036047 GO:0005515
Stsc90819g00015 375 ProSitePatterns Tub family signature 2. 360 375 IPR018066 -
Stsc90819g00015 375 ProSitePatterns Tub family signature 1. 302 315 IPR018066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90819g00015 Stsc-Chr90819 71946 74374 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90819g00015 6 375 TUB Transcription Factor Family AT1G47270 61.828 2.40e-159 451
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Stsc90819g00015 Tub 2.9e-103 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90819g00015 K19600 - zju:107420271 564.303