Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90817g00016 ATGCTTGCAGTGTCACCTTTGAGGAGTACCAGAGATGATGAAATCCAAGGAGAAGATATGGAGACCTTGTCCATTATTGGAGCGGTTGAAGATGACTTTGCTGAATTATCCGACGGCAACTTGTTGGAAAGCATCAACTTCGATGATCTCTTTGCCGGTGATGTCTTGCCGGATCTTGAGATGGATCCTGACATCTTTGCTGACTTCTCATCACTCGGCGGCTGTGAGAATTCATCGATAGTCTTGAATGGTAACAATAAATTCCATGATGATGATTATGACGGTGGTGGTAGTGGTGGCTGTGGTAAATCAGCTTCTTCAGATTCCGGGTCAAGTAGTCGAGGAGGGGAGGAGATTGTAAGCAAAAGAGATGGGTCCGTGGTAGTGAATCCATCCCCTGATAATAACAATAGTAAAGAAGGTGATAAAGGAAGAAAATCATCATCTTGTCAATTAAAGAATCCTAATCAAACCAAGAAAAAGGTTAAGAAGGTGGATTGGACTCCAGAATTGCACAGACGATTTGTTCAGGCAGTGGAGCAGCTAGGAGTTGATAAAGCAGTGCCTTCAAGGATTCTAGAAATCATGGGAATTGACTGTCTCACCCGCCATAACATCGCTAGCCACTTACAGAAATATCGATCACATAGGAAGCACATACTAGCTCGAGAGGCTGAAGCAGCGAGTTGGAGTCAAAGAAGGCAGATGTATGGTGGAGGAAGTAGAGGGAAGAGAGAGGTGGCCCCTTGGATTGCACCAACAATTGGTTTTCCTCCAACTCCAACTCCAACTCCAACTCCAATGCCGCCCCATTTTAGACCTTTACATGTATGGGGCCATCCCACTATGCACATGTGGCCGCCTAAACCTCATCAACCACCCCCGCCTACACCTTGGCCTTCAGACCTTTCTTATTGGCACCACCCTCACCCTCAAAGGGGTCATCAGAAGGCAGTACCACCAGGAACACCGTGTTTTCCACAATCTCTGACAACAAGGAGATTTGGGTCTCCACCAACTACCACCGTGGCGGGTATCCCACCACCACCGCGTGCCATCTACAAAGTAGATCACGGCATACCCAAGCCCTTAATTGACTTCCATCCGTCAAAGGAAAGCGTAGATGCTGCAATTGGTGATGTATTATCAAAACCATGGCTGCCACTGCCACTTGGGCTTAAAGCTCCGGCTGTAGAGTGTGTGATGGGTGAGTTACAGAGACAAGGAATTCCAAAAATCCCACCCTCTTGTGCTTAA 1257 0.471 MLAVSPLRSTRDDEIQGEDMETLSIIGAVEDDFAELSDGNLLESINFDDLFAGDVLPDLEMDPDIFADFSSLGGCENSSIVLNGNNKFHDDDYDGGGSGGCGKSASSDSGSSSRGGEEIVSKRDGSVVVNPSPDNNNSKEGDKGRKSSSCQLKNPNQTKKKVKKVDWTPELHRRFVQAVEQLGVDKAVPSRILEIMGIDCLTRHNIASHLQKYRSHRKHILAREAEAASWSQRRQMYGGGSRGKREVAPWIAPTIGFPPTPTPTPTPMPPHFRPLHVWGHPTMHMWPPKPHQPPPPTPWPSDLSYWHHPHPQRGHQKAVPPGTPCFPQSLTTRRFGSPPTTTVAGIPPPPRAIYKVDHGIPKPLIDFHPSKESVDAAIGDVLSKPWLPLPLGLKAPAVECVMGELQRQGIPKIPPSCA 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90817g00016 418 NCBIfam myb-like DNA-binding domain, SHAQKYF class 163 216 IPR006447 GO:0003677
Stsc90817g00016 418 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 159 218 IPR017930 -
Stsc90817g00016 418 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 417 IPR044825 GO:0003700|GO:0045893
Stsc90817g00016 418 FunFam Two-component response regulator 157 221 - -
Stsc90817g00016 418 SUPERFAMILY Homeodomain-like 163 219 IPR009057 -
Stsc90817g00016 418 MobiDBLite consensus disorder prediction 330 349 - -
Stsc90817g00016 418 Gene3D - 158 220 - -
Stsc90817g00016 418 MobiDBLite consensus disorder prediction 102 116 - -
Stsc90817g00016 418 MobiDBLite consensus disorder prediction 98 165 - -
Stsc90817g00016 418 Pfam Myb-like DNA-binding domain 165 214 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90817g00016 Stsc-Chr90817 67363 70369 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90817g00016 14 307 G2-like Transcription Factor Family AT5G44190 42.089 8.56e-57 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Stsc90817g00016 Myb_DNA-binding 5.3e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90817g00016 - - qsu:112013245 451.825