Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90817g00015 ATGGCAACAAAACACGCCATAGGAATCGATCTTGGCACCACCTATTCGTGTGTTGCTATCTGGGAGGAACAAAATTCTCGCGCGAAATCATTCACAACGATCAAGGCAACAGAACAACCCCTTCTTGTGTTGCTTTCACTGATTCACAAAGATTGGTGGGTGATGCTGCAAAAAATCAGGCATCAACCAACCCAACCAACACTCACCAAAGCTTTACCATGCTACTTTTTTACAGATGCCAAGAGGTTGATTGGGAGGAAATATAGCGATCCTGTTATTGAGAATGATTTGAAGCTTTGGCCGTTTAAGGTTGTAGCTGGTGGTGAAGACAAGCCAAAGATTGTTGTTAACTATAAAGGCCAAGAAAAGCAACTTACTCCTGAAGAGATTTCATCTATGATCCTTACAAAAATGAAGGACATTGCAGGGGCCTTTCTGGAATCTTCTGTGACAGATGCTGTTATTACTGTCCCTGCTTATTTCAACGACTCTCAAAGGAAAGCCACAAAAGATGCCGGTACCATTGCCGGCCTAAATGTTATGAGGATCCTAAATGAACCTACTGCGAAGCGCAATGTGTTTGTCTTTGATCTCGGCCGTGGCACCTTTGACGTGTCACTCCTTACAATTAAGGGTGGCACGTACCAGGTTAAGGCCACCGCCGGTGACACTCATCTAGGAGGAGAGGATTTTGACAACAGAATGGTGAGTTATCTGGCCAGAGAGTTCAAAAGGAAGCACAAAGAAGATATCAGTGGGAACTCCAAAGCTTTAAGGAGGTTGAGAAATGAGTGTGAAAAAGCCAAACGAACACTCTCTTATAACAGTGAAGCAACCATTGACATAGATACTTTGTTTAATGGCATTGACTTCTCTAAAACGATTAATCGCGCCAAGTTTGAGAAACTCAATGATGACCTATTCGAGAAGTGTATGGAAACAGTTAAGAGGTGTCTTGACGATGCCAAAGTCGACAAGAACGATGTAAATGACATCGTTCTTGTCGGTGGCTCGTCAAGAATCCCCAAAGTGCAGAAGCTTCTGCAGGATTTCTTTTCCGGAAAGGAACTCTGCAAGAGCATCAACCCTGACGAGGCCGTTGCTTATGGTGCCGCCGTTCAGGCTTCTTTGTTAATTAACGGTGGTCATGTAAGGAATGATAGTAAAACTTTGAAAAACTTGGTCCTAATGGATGTTACTCCTCTTTCGCTAGGAACATCGATAAAAGGGGATCTCATGAGTGTTCTGATTCCTAGAAACACTCCAATTCCTGCAAAGAAGAATGGAACATACTTCACAGATTGTGATGACCAACCTACTGTTTGCGTTGATGTGTATGAAGGAGAGAGGGTAAGAGCAAGTGAGAACAACATGCTTGGAATGTTCTCTTTCGAAGTTCCTCCTGCGCCTCGTGGATTTCCAATCTATATATGTTTCGAGGTGAATGAAGATGGGATCCTGAATGTGACTGTGGAGGAGAAACTGACCGGAAAGAAACAAGAGATTGCTATAAGTAATGAGAGAGAAAGGTTGACAGCTGAGGAGGTTGCGAAAATGATTGAAGAAGCTGAGATGTTGAAGGAGGAAGATGAGAAGTACAAGGAGAGAGTTAAAGCTAAGAATGCTTTGGATGAATGCGTGTACAAAGTGAAGAAAGCTATCAAGGATGGGAAGTTTTTTTCTAAGGTTTCGGCATTTGATAAACAGAGGATTATGGGTTCTATTAGAGATGCCAGAGATTTGGTTAATGATAATGCGATGGAGCAAGGGGAAACGTATCAGTATGAGAAGTGTTTGATGGAGTTGCAGAGTGTTACTAATGAAATAATGAATAAAATTAACCCTGATGGTGAAGAAAGTGATAGTGATGAGGATTGA 1878 0.4233 MATKHAIGIDLGTTYSCVAIWEEQNSRAKSFTTIKATEQPLLVLLSLIHKDWWVMLQKIRHQPTQPTLTKALPCYFFTDAKRLIGRKYSDPVIENDLKLWPFKVVAGGEDKPKIVVNYKGQEKQLTPEEISSMILTKMKDIAGAFLESSVTDAVITVPAYFNDSQRKATKDAGTIAGLNVMRILNEPTAKRNVFVFDLGRGTFDVSLLTIKGGTYQVKATAGDTHLGGEDFDNRMVSYLAREFKRKHKEDISGNSKALRRLRNECEKAKRTLSYNSEATIDIDTLFNGIDFSKTINRAKFEKLNDDLFEKCMETVKRCLDDAKVDKNDVNDIVLVGGSSRIPKVQKLLQDFFSGKELCKSINPDEAVAYGAAVQASLLINGGHVRNDSKTLKNLVLMDVTPLSLGTSIKGDLMSVLIPRNTPIPAKKNGTYFTDCDDQPTVCVDVYEGERVRASENNMLGMFSFEVPPAPRGFPIYICFEVNEDGILNVTVEEKLTGKKQEIAISNERERLTAEEVAKMIEEAEMLKEEDEKYKERVKAKNALDECVYKVKKAIKDGKFFSKVSAFDKQRIMGSIRDARDLVNDNAMEQGETYQYEKCLMELQSVTNEIMNKINPDGEESDSDED 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90817g00015 625 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 391 544 IPR029047 -
Stsc90817g00015 625 Pfam Hsp70 protein 6 613 IPR013126 GO:0005524|GO:0140662
Stsc90817g00015 625 FunFam Heat shock 70 kDa 227 310 - -
Stsc90817g00015 625 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 539 618 IPR029048 -
Stsc90817g00015 625 SUPERFAMILY Actin-like ATPase domain 190 378 IPR043129 -
Stsc90817g00015 625 PANTHER HEAT SHOCK PROTEIN 70KDA 6 570 IPR013126 GO:0005524|GO:0140662
Stsc90817g00015 625 FunFam Endoplasmic reticulum chaperone BiP 69 204 - -
Stsc90817g00015 625 Coils Coil 251 271 - -
Stsc90817g00015 625 SUPERFAMILY Actin-like ATPase domain 5 189 IPR043129 -
Stsc90817g00015 625 FunFam heat shock 70 kDa protein-like 77 133 - -
Stsc90817g00015 625 Coils Coil 516 540 - -
Stsc90817g00015 625 Gene3D - 78 133 - -
Stsc90817g00015 625 Gene3D - 190 358 - -
Stsc90817g00015 625 PRINTS 70kDa heat shock protein signature 393 412 - -
Stsc90817g00015 625 PRINTS 70kDa heat shock protein signature 5 18 - -
Stsc90817g00015 625 PRINTS 70kDa heat shock protein signature 361 381 - -
Stsc90817g00015 625 PRINTS 70kDa heat shock protein signature 472 488 - -
Stsc90817g00015 625 PRINTS 70kDa heat shock protein signature 329 345 - -
Stsc90817g00015 625 PRINTS 70kDa heat shock protein signature 153 173 - -
Stsc90817g00015 625 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 388 540 IPR029047 -
Stsc90817g00015 625 ProSitePatterns Heat shock hsp70 proteins family signature 3. 332 346 IPR018181 -
Stsc90817g00015 625 Gene3D - 7 375 - -
Stsc90817g00015 625 Gene3D - 541 614 IPR029048 -
Stsc90817g00015 625 Gene3D Actin; Chain A, domain 4 227 310 - -
Stsc90817g00015 625 ProSitePatterns Heat shock hsp70 proteins family signature 1. 9 16 IPR018181 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90817g00015 Stsc-Chr90817 63209 65167 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90817g00015 6 613 Calmodulin-binding Proteins AT3G12580 54.016 0.0 667
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90817g00015 K03283 - atri:130814315 655.595