Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90817g00013 ATGGCTTCGTTGTTTAAGGATCCAGCGAAGCTTTCAGCTTATCGAGATAGAAGATTTCCCGGAAATCAGGAGGAGTTTGAGCATGCTCTGCAGACATCAACAACGGTTTATGTTGGGAATATGTCATTTTACACCACAGAAGAGCAAGTTTATGAGCTGTTTTCCCGAGCTGGAGAAATCAAGAAGATCATCATGGGCTTAGATAAGAACTCGAAAACACCCTGCGGCTTCTGTTTCGTTCTATATTACTCGCGTGAAGATACGGAGGATGCTTGCAAATATATAAGTGGGACAATACTTGATGATCGCCCCATTCGTGTTGATTTTGATTGGGGGTTCCAGGATGGCAGACAATGGGGCCGTGGTCGTAGTGGTGGCCAGGTTCGTGATGAATACCGCACTGATTATGATCCTGGTAGAGGTGGTTATGGGAAGTTGGTCCAGAAAGAGTTAGAAGTACAAAGGCAGCTCGTAGACTATGGCACTGGTTCTTTGGGTTCTTTCCCACCTGTTATTCCACATTCATATGGTAGACATGGTGGAGGCCATGGCCATGGTCATGGTCACGGTCATGGTGGATCCCATCGGCATGGTAGAGACTACCATAGGAAGAGATACAGAGATGATGACCGGCACCATCCACACGAGTCCTCAAAGAGAACATCAGATCATGAATCTCGGAGAAACGCTGACCCTGATTCTAGACCGGAAAAAAATCCACGATTTCGCGAGAGTGGTGATTCTGACGATGACGAGGAAGATGACCGAAAAAGACGGGCTTAA 783 0.4674 MASLFKDPAKLSAYRDRRFPGNQEEFEHALQTSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDACKYISGTILDDRPIRVDFDWGFQDGRQWGRGRSGGQVRDEYRTDYDPGRGGYGKLVQKELEVQRQLVDYGTGSLGSFPPVIPHSYGRHGGGHGHGHGHGHGGSHRHGRDYHRKRYRDDDRHHPHESSKRTSDHESRRNADPDSRPEKNPRFRESGDSDDDEEDDRKRRA 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90817g00013 260 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 36 106 IPR000504 GO:0003723
Stsc90817g00013 260 MobiDBLite consensus disorder prediction 169 260 - -
Stsc90817g00013 260 SMART rrm1_1 35 108 IPR000504 GO:0003723
Stsc90817g00013 260 CDD RRM_NCBP2 36 113 IPR034148 -
Stsc90817g00013 260 PANTHER 20 KD NUCLEAR CAP BINDING PROTEIN 2 258 IPR027157 GO:0000339|GO:0005846|GO:0045292
Stsc90817g00013 260 SUPERFAMILY RNA-binding domain, RBD 22 144 IPR035979 GO:0003676
Stsc90817g00013 260 FunFam Nuclear cap-binding protein subunit 2 4 150 - -
Stsc90817g00013 260 Gene3D - 6 150 IPR012677 -
Stsc90817g00013 260 MobiDBLite consensus disorder prediction 203 260 - -
Stsc90817g00013 260 MobiDBLite consensus disorder prediction 180 202 - -
Stsc90817g00013 260 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 112 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90817g00013 Stsc-Chr90817 53936 57280 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90817g00013 31 109 Eukaryotic Initiation Factors Gene Family AT1G49760 27.848 9.70e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90817g00013 K12883 - gmx:100789535 391.349