Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90817g00004 ATGGTGGGAACGGGAACGATCGGACTTCAACATTTCTCGATCACCTTCAACAACTTGAACTTATTCCACCAAAGATCACATTCAATTCACTGCATTCCGGTGAAGCTGCGAAGGCCTAGAAGATATTTCGAGTGTAAACTAGCAGATGCTCAGGGCTTAACAATGAAGCGTTATGTTTATATAAATGATGATGAATCATCACATGATTTATACTGTGATAATCGTATATCAAACAGAAAGTATACTGTGCTGAACTTTATTCCGAAAAATTTATGGGAACAGTTCAGCCGGTTCATGAATCAGTACTTTTTGCTGATAGCTTGCCTACAGCTATGGTCTCTCATTACTCCAGTAAATCCTGCCAGTACATGGGGTCCACTTATCTTCATTTTTGCAGTCTCTGCAACAAAAGAGGCATGGGATGATCACCATAGATACCTGTCAGACAAGAAGGCAAATGAGAAAGAAGTCTGGGTTGTCAAAAATGGCATCAAGAAACTTATCCAAGCCCAGGATATTCATGTAGGTAACATAGTATGGCTACGTGAAAATGATGAAGTGCCTTGTGACCTTGTTTTGATTGGCTCCTCTGACCCACAAGGACTTTGCTATATAGAGACTGCTGCAATGGATGGTGAAACTGATCTGAAGACAAGGGTCATACCTTCTGCCTGCATGGGAATTGATGTTGAGCTATTGCACAAAATCAAGGGTGTAATTGAGTGTCCCACTCCAGATAAAGACATCAGAAGATTTGATGCTAACATGCGGTTGTTCCCTCCATTTATTGATAATGATATATGCCCTTTAACCATTAAAAACACAGTTCTTCAGTCATGTTACTTACGGAACACTGAGTGGGCATGTGGGGTAGCTGTGTACACAGGCAATGAAACCAAATTGGGCATGAGTAGAGGTATACCAGAACCAAAGCTCACTGCTATGGATGCCATGATAGACAAGTTGACTGGTGCTATATTTGTATTCCAAATTGTTGTTGTAATGGTTCTTGGCATTGCGGGTAATGTTTGGAAGGACACAGAAGCAAAGAAACAATGGTATGTTCTTTACCCTGATAAAGGCCCTTGGTATGAACTATTGATTATCCCTCTACGGTTCGAGCTTCTTTGTTCCATCATGATACCGATTTCAATTAAGGTATCTCTAGATCTAGTGAAGGGCTTGTATGCAAAGTTTATTGATTGGGACGATCAAATGGTTGACCTTGAGACTAGTACTCCATCCAATGCAACAAATACAGCGATAAGTGAGGACTTGGGACAAGTTGAGTACATTTTGACTGACAAGACAGGCACCTTGACTGAGAATAAGATGATATTTAGAAGATGTTGTATTAGCGGCATTTTCTATGGAAATGAGAATGGTGATGCATTGAAAGATGTAGAGCTTCTCCATGCTGTTTCCAGTGGTTCACCTGATGTTGTACAGTTTCTTACAATTATGGCAATATGCAATACTGTCATACCTACACAAAGCAAAACTGGAGATATATTGTATAAGGCACAATCTCAGGATGAGGATGCTCTTGTTCAAGCTGCTGCTCGACTGCATATGGTATTCTTCAATAAGAGTGGAAACATTCTCGAAGTCAAATTTAACTCCTCGATACTTCAGTATGAAGTTCTGGAAACCTTAGAATTCACCTCAGACAGGAAAAGAATGTCATTAGTGTTGAAAGATTGTCAAAACGGAAAGATTCTTCTTTTGTCGAAAGGAGCAGATGAGGCTATTCTTCCTTATGCTCGTACCGGGCAGCAAACTCGGAATTTCGTTGAAGCTGTGGAACAATATGCTCACTTGGGACTACGCACACTATGTTTGGCTTGGCGTGAATTAAGAGAAGATGAATATCGAGAATGGTCTTTAATGTTTAAAGAGGCCAATAGCACTTTGGTTGATAGAGAGTGGAGAGTTGCTGAGGTCTGCCAAAGAATAGAACACAATTTGGAAGTCCTTGGTGTTACAGCCATAGAGGATCGTTTGCAGGATGGAGTTCCTGAAACAATAGAAACTCTAAGAAAAGCTGGAATAAATTTTTGGATGCTAACAGGAGACAAGCAGAATACTGCAATACAAATTGCGCTGTCATGTAATTTTATTTCCCCAGAACCGAAGGGCCAGCTTCTTTCGATTGATGGAAAAACGGAGGATGAGGTTCGTAGAAGTTTAGAGCGAGTGCTTCTTACAATGCGGATAACTACCTCAGAACCCAAGGATGTGGCTTTTGTTATTGATGGCTGGGCTCTTGATTTTGCACTTAATCACTACCGCAAAGCTTTCACTGAGCTGGCAATATTGTCAAGGACTGCCATATGTTGTCGCGTGACACCATCCCAAAAAGCTCAGCTTGTACAAATCTTAAAATCATGCGATTATAGAACTTTGGCAATTGGAGATGGTGGGAATGATGTAAGGATGATACAACAAGCTGATATTGGTGTGGGCATCAGTGGCAGAGAAGGATTGCAGGCAGCCAGAGCAGCTGATTACAGTATTGGAATACATGGCCGCTACTCTTACAACCGGACAGCATTTCTTTCTCAGTATTCATTCTACAAGTCCCTACTGATATGCTTTATCCAAATATTTTTTTCATTTATTTCAGGGGTCTCTGGAACCAGCCTCTTTAATTCTGTCAGCTTGATGGCTTATAATGTTTTCTACACTAGTGTTCCTGTTCTAGTCAGTGTGCTTGACAAAGATCTTAGCGAGGAAACTGTGATTCAGCATCCTCAAATTTTATTTTATTGCCAAGCTGGGAGACTTCTAAATCCCAGTACATTTGCTGGATGGTTTGGGCGATCTCTCTTCCATGCAATAGTTGTATTTCTTATAAGCATACATGCCTATGCCTATGATAAAAGTGAAATGGAGGAGGTTTCAATGGTTGCACTCTCCGGTTGTATTTGGTTGCAGGCTTTTGTAGTGGCGATGGAAACCAATTCATTTACAATATTGCAACATCTTGCAATATGGGGCAATTTAGCTGGGTTTTATGCTATCAACTGGATCTTCAGTGCTCTTCCTGCATCGGGGATGTATACAATTATGTTTCGGTTGTGTCGACAACCGTCATATTGGATATCAATTTTTCTTATGACTGCAGCAGGGATGAGTCCAATCCTTGCTATCAAGTACTTCCGATTTACATATAGACCTAGCAAAATCAATACACTTCAGCAGGCTGAACGACTTGGTGGACCAATTGTGTCTCTCGGTACCATTGAGCCTCAGCCCCGACCACTTATAGAGAAAGATGTTTCTACCCTGTCAATAACACAACCCAAGAACAGAAATCCTGTGTATGAACCTCTGTTGTCAGATTCTCCAAATGCCACCAGAAGATCTACAGGAACGCCATTTGATTTTTTTCAGTCACAGTCAAGGTCGTCTCTGCCTAACTACTCTAGGAACTGCAAGGATAACTGA 3450 0.4101 MVGTGTIGLQHFSITFNNLNLFHQRSHSIHCIPVKLRRPRRYFECKLADAQGLTMKRYVYINDDESSHDLYCDNRISNRKYTVLNFIPKNLWEQFSRFMNQYFLLIACLQLWSLITPVNPASTWGPLIFIFAVSATKEAWDDHHRYLSDKKANEKEVWVVKNGIKKLIQAQDIHVGNIVWLRENDEVPCDLVLIGSSDPQGLCYIETAAMDGETDLKTRVIPSACMGIDVELLHKIKGVIECPTPDKDIRRFDANMRLFPPFIDNDICPLTIKNTVLQSCYLRNTEWACGVAVYTGNETKLGMSRGIPEPKLTAMDAMIDKLTGAIFVFQIVVVMVLGIAGNVWKDTEAKKQWYVLYPDKGPWYELLIIPLRFELLCSIMIPISIKVSLDLVKGLYAKFIDWDDQMVDLETSTPSNATNTAISEDLGQVEYILTDKTGTLTENKMIFRRCCISGIFYGNENGDALKDVELLHAVSSGSPDVVQFLTIMAICNTVIPTQSKTGDILYKAQSQDEDALVQAAARLHMVFFNKSGNILEVKFNSSILQYEVLETLEFTSDRKRMSLVLKDCQNGKILLLSKGADEAILPYARTGQQTRNFVEAVEQYAHLGLRTLCLAWRELREDEYREWSLMFKEANSTLVDREWRVAEVCQRIEHNLEVLGVTAIEDRLQDGVPETIETLRKAGINFWMLTGDKQNTAIQIALSCNFISPEPKGQLLSIDGKTEDEVRRSLERVLLTMRITTSEPKDVAFVIDGWALDFALNHYRKAFTELAILSRTAICCRVTPSQKAQLVQILKSCDYRTLAIGDGGNDVRMIQQADIGVGISGREGLQAARAADYSIGIHGRYSYNRTAFLSQYSFYKSLLICFIQIFFSFISGVSGTSLFNSVSLMAYNVFYTSVPVLVSVLDKDLSEETVIQHPQILFYCQAGRLLNPSTFAGWFGRSLFHAIVVFLISIHAYAYDKSEMEEVSMVALSGCIWLQAFVVAMETNSFTILQHLAIWGNLAGFYAINWIFSALPASGMYTIMFRLCRQPSYWISIFLMTAAGMSPILAIKYFRFTYRPSKINTLQQAERLGGPIVSLGTIEPQPRPLIEKDVSTLSITQPKNRNPVYEPLLSDSPNATRRSTGTPFDFFQSQSRSSLPNYSRNCKDN 1149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90817g00004 1149 PRINTS P-type cation-transporting ATPase superfamily signature 804 823 - -
Stsc90817g00004 1149 PRINTS P-type cation-transporting ATPase superfamily signature 682 692 - -
Stsc90817g00004 1149 PRINTS P-type cation-transporting ATPase superfamily signature 433 447 - -
Stsc90817g00004 1149 SUPERFAMILY Calcium ATPase, transduction domain A 154 302 IPR008250 -
Stsc90817g00004 1149 FunFam Phospholipid-transporting ATPase 503 646 - -
Stsc90817g00004 1149 SFLD p-type atpase 418 840 IPR044492 -
Stsc90817g00004 1149 Gene3D - 656 840 IPR023214 -
Stsc90817g00004 1149 Pfam Phospholipid-translocating ATPase N-terminal 59 124 IPR032631 -
Stsc90817g00004 1149 Pfam Phospholipid-translocating P-type ATPase C-terminal 841 1061 IPR032630 -
Stsc90817g00004 1149 Pfam E1-E2 ATPase 153 345 - -
Stsc90817g00004 1149 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 440 627 IPR023299 GO:0000166
Stsc90817g00004 1149 SUPERFAMILY HAD-like 422 839 IPR036412 -
Stsc90817g00004 1149 Gene3D - 488 639 IPR023299 GO:0000166
Stsc90817g00004 1149 FunFam Phospholipid-transporting ATPase 656 842 - -
Stsc90817g00004 1149 SUPERFAMILY Calcium ATPase, transmembrane domain M 67 1060 IPR023298 -
Stsc90817g00004 1149 MobiDBLite consensus disorder prediction 1102 1149 - -
Stsc90817g00004 1149 NCBIfam HAD-IC family P-type ATPase 654 715 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc90817g00004 1149 NCBIfam HAD-IC family P-type ATPase 770 878 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc90817g00004 1149 Gene3D - 128 305 - -
Stsc90817g00004 1149 FunFam Phospholipid-transporting ATPase 129 305 - -
Stsc90817g00004 1149 ProSitePatterns E1-E2 ATPases phosphorylation site. 435 441 IPR018303 -
Stsc90817g00004 1149 NCBIfam phospholipid-translocating P-type ATPase 480 1067 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Stsc90817g00004 1149 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 53 1071 - -
Stsc90817g00004 1149 SFLD C1.7: P-type atpase like 418 840 - -
Stsc90817g00004 1149 Pfam haloacid dehalogenase-like hydrolase 431 755 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90817g00004 Stsc-Chr90817 21823 31863 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90817g00004 55 1149 Primary Pumps ATPases AT5G44240 84.206 0.0 1971
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90817g00004 K01530 - gmx:100786505 2028.45