Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90817g00003 ATGAGCAGCAGTATCTGTTCTGATCATCAGCAACACCATCACAAGTTCTACTCTTCTCAACAACTCCTCTCTCCTAAGAAATCCCTCAGAGACATTGATGTTCCACCAAGGAAGCTCCTCACCCGTCGTGGTGCCTCCGCCATTGAACCCGGCGACATGTTCTCCGACGACACGCTTTTTCAGAAATTCCTCCCTTGCAACAACCCTGCTGACTCTGATTCCGGCTCCGACGGCGACGACCCTTACTCGTCCGACCATTTCCGGATGTACGAGTTCAAGGTCCGCCGCTGCACTCGCAGCCGGAGCCACGACTGGACTGACTGCCCTTTCGCCCACCCGGGCGAAAAGGCACGCCGTCGCGACCCGCGCCGCTATCACTACTCCGGAACAGTCTGTCCGGAGTACCGGCGCGGCGCGTGCAGCCGTGGCGACAGCTGCGAGTTCGCACACGGCGTGTTTGAATGCTGGCTCCACCCTGCAAGGTACAGAACCGAAGCATGCAAAGATGGGAAGAACTGCAAGAGGAAAGTGTGCTTTTTCGCTCACACCCCCAAACAACTGAGGATCCTTCCGGTTACTTCAAATGACATGTCTCCATGCAAAAAGAACAAGCTTTTCTTGAACCCTTCTTCAGGTTCTTCTAGTAACAACAATAGCTGCTGTTTGTTCTGCCACCACTGTACCGGTGGTGCTGCTGCCGTTAATTCTCCAACCTCCACGCTTTTCGGCATGTCCCGTTTCTCGCCGCCGCTCTCACCGTCTTCCTCCGCCACGTCGCCGCCGGTTTCTCCGGTTAGTAGGCTGTCCCGATACAGTGCGTGTCGTGGCGGCGGCGGCGGTGGTGGTGCAGGTAATGTGAGTTACAAAGACGTGGTTAATGAATTGATGAATTCTTTGGAAGGTTTGAGTCTTAGCGACGCTTTGAATTTTAGCGACGTTTCGGGTGTTTCTGCTGCGAAAGTAGGAACTAACATGCCGTGGATTGATGTTCCTCTGAATTGTGAGGATCAGCAAGAGTTTCTTTTTTCTCCATCTTCTCCAATGATGGTGACGCCAACAAGAGGCTATGATGATGCTGATGGGAAATTTTCGAGGTTTTTTATTAGCAACGAAAACAATAAGGCGGTTGCTAATAAATCAAATTCTAATGCTAATAATATTTCTAATGATATTATTAATGGGTCGAATAATAATTGCCCTGCTCCTGATCTCGGGTGGGTGAATGATCTTCTGATGTAG 1239 0.5101 MSSSICSDHQQHHHKFYSSQQLLSPKKSLRDIDVPPRKLLTRRGASAIEPGDMFSDDTLFQKFLPCNNPADSDSGSDGDDPYSSDHFRMYEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRYHYSGTVCPEYRRGACSRGDSCEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHTPKQLRILPVTSNDMSPCKKNKLFLNPSSGSSSNNNSCCLFCHHCTGGAAAVNSPTSTLFGMSRFSPPLSPSSSATSPPVSPVSRLSRYSACRGGGGGGGAGNVSYKDVVNELMNSLEGLSLSDALNFSDVSGVSAAKVGTNMPWIDVPLNCEDQQEFLFSPSSPMMVTPTRGYDDADGKFSRFFISNENNKAVANKSNSNANNISNDIINGSNNNCPAPDLGWVNDLLM 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90817g00003 412 SMART c3hfinal6 161 184 IPR000571 GO:0046872
Stsc90817g00003 412 SMART c3hfinal6 126 152 IPR000571 GO:0046872
Stsc90817g00003 412 Gene3D - 128 190 - -
Stsc90817g00003 412 PANTHER UNKEMPT FAMILY MEMBER 42 411 IPR045234 -
Stsc90817g00003 412 FunFam Zinc finger CCCH domain-containing protein 66 84 152 - -
Stsc90817g00003 412 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 131 151 IPR000571 GO:0046872
Stsc90817g00003 412 SUPERFAMILY CCCH zinc finger 125 155 IPR036855 GO:0046872
Stsc90817g00003 412 MobiDBLite consensus disorder prediction 1 22 - -
Stsc90817g00003 412 ProSiteProfiles Zinc finger C3H1-type profile. 127 153 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90817g00003 Stsc-Chr90817 18633 20190 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90817g00003 79 188 C2H2 Transcription Factor Family AT5G07500 70.909 6.38e-54 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Stsc90817g00003 zf-CCCH 3.3e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90817g00003 K23047 - gmx:100787049 424.861