Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90817g00001 ATGCCTGCACAGAAGCGCTCTTACCCTGACACTCTCGACGACGCCGACGACGACTCCAACCACGTCTTCCCTCATCGTCACCACAAGCACCCCCGCGACCGCACCCTCAAGCCCCAACCTCAAGATGAAGATGTTCCTGCAAACCATAAGGAAGAGGATGCAGAGCAAGAAGATGAAGAAGATGAGCAACAAGGAGCAGAAGATGAAGATGAAGAGGATGAAGATGAAGATGAAGATGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGACGATGATGACGAGGATGGAGATGAAGATGAAGATGAAGAAGAAGGGAAACACGACGAAGAGGATTCTGACGACACCCCATCTTCGGGTTCTGAAGAAAAACCAGAATTTGTGTATGTAGAACTTCTGGAAATTCGTAAGGATGTCCAATGCCCAATTTGCCTTGGCATTATTAAGAAAACCAGAACTGTTATGGAATGCTTGCACCGGTTTTGCAGGGAATGCATTGACAAGTCAATGCGACTTGGGAACAATGAATGCCCTGCTTGCCGAACACATTGTGCCAGTCGCCGTTCTTTGAGAGATGATCCGAAATATGATGCCCTTATTGCTGCTTTATATCCAGATATTGAGAAGTATGAGGAAGAGGAGCTTGAATTTCGTGAAGAGGAGAAGAACCGCAATAAGCAGATTCAAGCTTCGATTGCAAAAGTTGTTCAACGGCAGTCTGAAGCACTAGTTAAGAGACGTAAAGATTCACCGAGTGGATTTGTGACAAGATCCCAGCGGAATCAACGAAATGCTTCTAGGAGACAAAATCAAGTGATTGATATTCAAGGATCTGAGGATAATGAGGAGGAAAATGACAATAATGAAAAGGACTCGTCATCTGCTGATGAGCGGGGTACAGAGGTGAGGCAAAGAAGGAGAAAGAGATGGACCAGAGTTCGCCCCTCTCAGCCCTCATCATCAATGGCAAGTCCTGATGGAGGATGTGCAGAAAGTGACTTAGATAACGGCAGAGAAAATCGAGGACTTTCAAGGCAGGTGTCAAAACCTCGAAAGCTTACTTGGGGAAGGGGTGGATTTAGAAGTCACACAAGGCATGGCAGTGGTGGTGGTAGTAATAGCAAAATTTCTCGCAGTAGTCGAGTGTCTAAGATGTTAGATGTCCATCTCATGCTTTATTCTCTGGGCAAACAAGATGCACCTCGTTTGGAGCAGCCACACCTTTGCTGTCGCGCAACTTTGTCTGTCAAGAGCCTTTGCGAATATGTCGCTCGGCAAACACCTGTGCCTGTTGAAGAAGTTGAGATATTGGCAGTTAAAGGATGCATCGGCTCAAATTGCGGCAAGTCAACTGATGAGGCTTCATCCTTGATATGTGATGAACTATGTGATGAGCTAACAACTCTGGTTATAGATCCATCTACATATGAACTAGAAATTTTGAAGGGAGATGAATCTTTAGAAGGTCTTAGTTCTAAATGCATATCTAAAAGGGGGCATTTGATTCTGGCATACAGGCGGAAAGAGGCAATATAG 1539 0.4496 MPAQKRSYPDTLDDADDDSNHVFPHRHHKHPRDRTLKPQPQDEDVPANHKEEDAEQEDEEDEQQGAEDEDEEDEDEDEDEEEEEEEEEEEEDDDDEDGDEDEDEEEGKHDEEDSDDTPSSGSEEKPEFVYVELLEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPKYDALIAALYPDIEKYEEEELEFREEEKNRNKQIQASIAKVVQRQSEALVKRRKDSPSGFVTRSQRNQRNASRRQNQVIDIQGSEDNEEENDNNEKDSSSADERGTEVRQRRRKRWTRVRPSQPSSSMASPDGGCAESDLDNGRENRGLSRQVSKPRKLTWGRGGFRSHTRHGSGGGSNSKISRSSRVSKMLDVHLMLYSLGKQDAPRLEQPHLCCRATLSVKSLCEYVARQTPVPVEEVEILAVKGCIGSNCGKSTDEASSLICDELCDELTTLVIDPSTYELEILKGDESLEGLSSKCISKRGHLILAYRRKEAI 512
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Stsc90817g00001 512 PANTHER OS11G0578200 PROTEIN 70 510 IPR044592 -
Stsc90817g00001 512 ProSiteProfiles Zinc finger RING-type profile. 142 182 IPR001841 -
Stsc90817g00001 512 Coils Coil 208 239 - -
Stsc90817g00001 512 MobiDBLite consensus disorder prediction 255 277 - -
Stsc90817g00001 512 MobiDBLite consensus disorder prediction 1 125 - -
Stsc90817g00001 512 ProSitePatterns Zinc finger RING-type signature. 158 167 IPR017907 -
Stsc90817g00001 512 Coils Coil 49 94 - -
Stsc90817g00001 512 Pfam Zinc finger, C3HC4 type (RING finger) 141 181 - -
Stsc90817g00001 512 MobiDBLite consensus disorder prediction 35 52 - -
Stsc90817g00001 512 MobiDBLite consensus disorder prediction 333 347 - -
Stsc90817g00001 512 MobiDBLite consensus disorder prediction 242 380 - -
Stsc90817g00001 512 MobiDBLite consensus disorder prediction 9 24 - -
Stsc90817g00001 512 CDD RING-HC_RING1-like 139 204 - -
Stsc90817g00001 512 SMART ring_2 142 181 IPR001841 -
Stsc90817g00001 512 MobiDBLite consensus disorder prediction 53 112 - -
Stsc90817g00001 512 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 212 IPR013083 -
Stsc90817g00001 512 SUPERFAMILY RING/U-box 128 196 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Stsc90817g00001 Stsc-Chr90817 2992 8186 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90817g00001 135 205 C3H Transcription Factor Family AT3G23060 35.135 4.88e-07 50.4
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90817g00001 K10695 - gmx:100776547 544.273