Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc90817g00001 | ATGCCTGCACAGAAGCGCTCTTACCCTGACACTCTCGACGACGCCGACGACGACTCCAACCACGTCTTCCCTCATCGTCACCACAAGCACCCCCGCGACCGCACCCTCAAGCCCCAACCTCAAGATGAAGATGTTCCTGCAAACCATAAGGAAGAGGATGCAGAGCAAGAAGATGAAGAAGATGAGCAACAAGGAGCAGAAGATGAAGATGAAGAGGATGAAGATGAAGATGAAGATGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGACGATGATGACGAGGATGGAGATGAAGATGAAGATGAAGAAGAAGGGAAACACGACGAAGAGGATTCTGACGACACCCCATCTTCGGGTTCTGAAGAAAAACCAGAATTTGTGTATGTAGAACTTCTGGAAATTCGTAAGGATGTCCAATGCCCAATTTGCCTTGGCATTATTAAGAAAACCAGAACTGTTATGGAATGCTTGCACCGGTTTTGCAGGGAATGCATTGACAAGTCAATGCGACTTGGGAACAATGAATGCCCTGCTTGCCGAACACATTGTGCCAGTCGCCGTTCTTTGAGAGATGATCCGAAATATGATGCCCTTATTGCTGCTTTATATCCAGATATTGAGAAGTATGAGGAAGAGGAGCTTGAATTTCGTGAAGAGGAGAAGAACCGCAATAAGCAGATTCAAGCTTCGATTGCAAAAGTTGTTCAACGGCAGTCTGAAGCACTAGTTAAGAGACGTAAAGATTCACCGAGTGGATTTGTGACAAGATCCCAGCGGAATCAACGAAATGCTTCTAGGAGACAAAATCAAGTGATTGATATTCAAGGATCTGAGGATAATGAGGAGGAAAATGACAATAATGAAAAGGACTCGTCATCTGCTGATGAGCGGGGTACAGAGGTGAGGCAAAGAAGGAGAAAGAGATGGACCAGAGTTCGCCCCTCTCAGCCCTCATCATCAATGGCAAGTCCTGATGGAGGATGTGCAGAAAGTGACTTAGATAACGGCAGAGAAAATCGAGGACTTTCAAGGCAGGTGTCAAAACCTCGAAAGCTTACTTGGGGAAGGGGTGGATTTAGAAGTCACACAAGGCATGGCAGTGGTGGTGGTAGTAATAGCAAAATTTCTCGCAGTAGTCGAGTGTCTAAGATGTTAGATGTCCATCTCATGCTTTATTCTCTGGGCAAACAAGATGCACCTCGTTTGGAGCAGCCACACCTTTGCTGTCGCGCAACTTTGTCTGTCAAGAGCCTTTGCGAATATGTCGCTCGGCAAACACCTGTGCCTGTTGAAGAAGTTGAGATATTGGCAGTTAAAGGATGCATCGGCTCAAATTGCGGCAAGTCAACTGATGAGGCTTCATCCTTGATATGTGATGAACTATGTGATGAGCTAACAACTCTGGTTATAGATCCATCTACATATGAACTAGAAATTTTGAAGGGAGATGAATCTTTAGAAGGTCTTAGTTCTAAATGCATATCTAAAAGGGGGCATTTGATTCTGGCATACAGGCGGAAAGAGGCAATATAG | 1539 | 0.4496 | MPAQKRSYPDTLDDADDDSNHVFPHRHHKHPRDRTLKPQPQDEDVPANHKEEDAEQEDEEDEQQGAEDEDEEDEDEDEDEEEEEEEEEEEEDDDDEDGDEDEDEEEGKHDEEDSDDTPSSGSEEKPEFVYVELLEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPKYDALIAALYPDIEKYEEEELEFREEEKNRNKQIQASIAKVVQRQSEALVKRRKDSPSGFVTRSQRNQRNASRRQNQVIDIQGSEDNEEENDNNEKDSSSADERGTEVRQRRRKRWTRVRPSQPSSSMASPDGGCAESDLDNGRENRGLSRQVSKPRKLTWGRGGFRSHTRHGSGGGSNSKISRSSRVSKMLDVHLMLYSLGKQDAPRLEQPHLCCRATLSVKSLCEYVARQTPVPVEEVEILAVKGCIGSNCGKSTDEASSLICDELCDELTTLVIDPSTYELEILKGDESLEGLSSKCISKRGHLILAYRRKEAI | 512 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc90817g00001 | 512 | PANTHER | OS11G0578200 PROTEIN | 70 | 510 | IPR044592 | - | |
Stsc90817g00001 | 512 | ProSiteProfiles | Zinc finger RING-type profile. | 142 | 182 | IPR001841 | - | |
Stsc90817g00001 | 512 | Coils | Coil | 208 | 239 | - | - | |
Stsc90817g00001 | 512 | MobiDBLite | consensus disorder prediction | 255 | 277 | - | - | |
Stsc90817g00001 | 512 | MobiDBLite | consensus disorder prediction | 1 | 125 | - | - | |
Stsc90817g00001 | 512 | ProSitePatterns | Zinc finger RING-type signature. | 158 | 167 | IPR017907 | - | |
Stsc90817g00001 | 512 | Coils | Coil | 49 | 94 | - | - | |
Stsc90817g00001 | 512 | Pfam | Zinc finger, C3HC4 type (RING finger) | 141 | 181 | - | - | |
Stsc90817g00001 | 512 | MobiDBLite | consensus disorder prediction | 35 | 52 | - | - | |
Stsc90817g00001 | 512 | MobiDBLite | consensus disorder prediction | 333 | 347 | - | - | |
Stsc90817g00001 | 512 | MobiDBLite | consensus disorder prediction | 242 | 380 | - | - | |
Stsc90817g00001 | 512 | MobiDBLite | consensus disorder prediction | 9 | 24 | - | - | |
Stsc90817g00001 | 512 | CDD | RING-HC_RING1-like | 139 | 204 | - | - | |
Stsc90817g00001 | 512 | SMART | ring_2 | 142 | 181 | IPR001841 | - | |
Stsc90817g00001 | 512 | MobiDBLite | consensus disorder prediction | 53 | 112 | - | - | |
Stsc90817g00001 | 512 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 93 | 212 | IPR013083 | - | |
Stsc90817g00001 | 512 | SUPERFAMILY | RING/U-box | 128 | 196 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc90817g00001 | Stsc-Chr90817 | 2992 | 8186 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc90817g00001 | 135 | 205 | C3H Transcription Factor Family | AT3G23060 | 35.135 | 4.88e-07 | 50.4 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc90817g00001 | K10695 | - | gmx:100776547 | 544.273 |