Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90815g00007 ATGCAAACACAAAACGATTCACCACCCGAATCGCCTTCTAACTCACTGAGCCAACTCGCTCAGAGCACGTTCCCAACCTCCAACAACAACAAAAGCAACACCATAATGCTTGCAGCCATTGTTTCTCTTCTCCTTGTAATCCTCTTCGTCCTTCTTCTCCACCTCTACGCCAAATGCTTCCTCTCTCATCATCATTCTCCCCAACCACCCCAACCATCTCCCCGCCATCGCCGTCCCCGCCGTGCAACTCTCACCGCCTTTCAAGGTCCACCCCAGTTCCAGTTCCACCACTTCCGCGTAGAAGACTCACCATTTACCACCAAAGGACTCGATTGCGCTACGATTTCATCGATTCCCATGTTTGTGTACGAAGAACAGAAGCAGAGGAAAACAGAGCCAGAAGAAGGAGAAGAAGAAGAAGCAGAGGAGTTAGAATGCGTGATTTGTTTGAGCGGTTTCGAAGAAGGTGAAGTGGGAAGAACGTTGCCAAAGTGTGGACACGCTTTTCACGTGGAATGCATTGATATGTGGCTAAGTTCTCATTCCAATTGTCCAATTTGTAGAGCTCCCGTTGTTGCTCTTCATCAACAGAATGATGATTATTGTGATGATGATGAAGGTCGTGGTGGTGTGGTTGAGATTGTTATTGGTACTCCCAGTTATGAGATTAGTGAGAGTCAGAATAGGAATGATTATGATGATAATAATTCAGTTTCAATTTCAGGTTCTGAAACTTCATATTCTTCTTCTTCTTCTTCATCTTTGTTGTTGGGGTGTTCTTTGAAGAGATTTCTGAGAAAGGTTTTTGCCTCATGA 816 0.4498 MQTQNDSPPESPSNSLSQLAQSTFPTSNNNKSNTIMLAAIVSLLLVILFVLLLHLYAKCFLSHHHSPQPPQPSPRHRRPRRATLTAFQGPPQFQFHHFRVEDSPFTTKGLDCATISSIPMFVYEEQKQRKTEPEEGEEEEAEELECVICLSGFEEGEVGRTLPKCGHAFHVECIDMWLSSHSNCPICRAPVVALHQQNDDYCDDDEGRGGVVEIVIGTPSYEISESQNRNDYDDNNSVSISGSETSYSSSSSSSLLLGCSLKRFLRKVFAS 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90815g00007 271 Pfam Ring finger domain 145 188 IPR001841 -
Stsc90815g00007 271 SMART ring_2 146 187 IPR001841 -
Stsc90815g00007 271 SMART FANCL_C_2 142 195 - -
Stsc90815g00007 271 FunFam RING-H2 finger protein ATL1 97 193 - -
Stsc90815g00007 271 ProSiteProfiles Zinc finger RING-type profile. 146 188 IPR001841 -
Stsc90815g00007 271 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 28 195 IPR044675 -
Stsc90815g00007 271 MobiDBLite consensus disorder prediction 224 253 - -
Stsc90815g00007 271 MobiDBLite consensus disorder prediction 1 28 - -
Stsc90815g00007 271 CDD RING-H2_EL5-like 146 188 - -
Stsc90815g00007 271 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 193 IPR013083 -
Stsc90815g00007 271 SUPERFAMILY RING/U-box 135 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90815g00007 Stsc-Chr90815 38104 38919 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90815g00007 32 194 Rapid Response to Elicitors AT3G16720 38.650 7.18e-29 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90815g00007 - - vvo:131624082 196.438