Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90814g00013 ATGCTAACCACAATCCTCAGAAAAACTTCTTCTTCTGCTATCACTAGGCGCGCTCTCGCCGCCGCCATAGCCTCCACCACCGACCCCGTTCTCAACCGAGTCGGCTCTTCCTTCTCATCCTCCGCCGCCGTCGGTGAGCTGCGACGATTCTCCGATTTGACAGGGTTTTTGAAAGGGAGAGCTTTTCACTCTAATTCAGGGCCATTGAATTTCCGCTCCTCGTTCTGTTCTCGCGCGGAGTTTGCGGTTGAGGATTACGCCTATGAAGAAGGGTCTAGAGGGAACAGTGCTGATGAAGGCCTCGAGATCGCGAAGCTTGGGATTTCGCAGGATATTGTTTCTGCTCTTGCAAAGAAAGGAATCCTCAAGCTCTTTCCTATTCAGAAAGCTGTGCTTGAACCTGCTATGCAAGGACGTGATATGATTGGACGAGCTAGAACAGGAACTGGAAAGACTCTTGCGTTTGGGATACCAATCATTGATAAGATCATTCAGTTCAATGCTAAGCATGGGCGAGGAAGGAACCCCTTGGCTTTGGTTTTGGCTCCTACCAGAGAGCTTGCACGACAGGTTGAGAAGGAATTCCAGGAGGCGGCACCTAACTTGGATACCATCTGTGTTTATGGGGGTACACCCATCTCTCGACAGATGAGGCAGCTTGATTACGGTGTTGATATTGCTGTAGGCACTCCTGGTCGCATTATCGACCTTCTCAATAGAGGTGCTCTGAACTTACAGGAAGTTCAGTTTGTTGTTCTCGATGAAGCTGATCAGATGCTACAAGTTGGCTTTCAGGAAGATGTTGAAAAGATCTTGGAGAGGTTGCCCCCTAAACGTCAGACTCTTATGTTCTCTGCAACAATGCCTTCTTGGATAAAGCAGATTACTCGTAATTACCTACAAGATCCCCTGACCATTGATCTTGTTGGAGAATCTGATCAGAAGTTGGCAGATGGGATTTCGCTATATTCTATTGCGACTGATAATTATGTTAAAGCAGGAGTTCTTGGACCTCTTATAACAGAGCATGCAAAGGGAGGAAAATGCATCGTTTTCACCCAAACCAAACGCGATGCTGATCGATTAACATATGCCTTGGCAAAAACTGTTCAATGTGAGCCCTTGCATGGAGATATATCCCAAGCTCAGAGGGAAAGAACTCTGGCTGGATTCAGAAGCGGGTATTTTAACGTTTTGGTTGCAACCGATGTTGCTTCACGTGGGCTTGATATACCAAATGTGGATCTTGTAATACACTATGATCTTCCGAATTCATCAGAGATATTTGTTCATCGATCTGGACGAACAGGTCGTGCTGGTAAGAAAGGAACTGCTATTCTTGTTTATACGGATGATCAATCCAGGGCTGTTAGGACTATTGAGCGGGATGTGGGCTGTAGGTTTTCAGAGCTACCAAGGATTGCTGTTGAGCCTGGGTCAGTTGACATGGGTGGTGGACGATTTGGTTCTTATGGAGGTGGAAGGGATCGTCGATCTGGTGATTCAGGTTTTGGTCGTAGTTCTGGATTTGGTCGTTCAGGGGGCTATGGAAACTCTGGGTTTGGCCGTTCTAGCTATGGAAATTCTGGGTCAAGTTCTAGTCGTTTTGGTGACTCTGGTATGAGTCGACCCAGAGGAGGATTTTCAGGTGATTCATCTGGTGGATCAGGCTTTGGTCGCTTTGGCTCCTCTGGTGGCTTTGGTTCAGGTCAATCAGGAAGCAGATCTGGAGGATTCAGTGGTTCAGGTGGTTTTGGTGGTTCAGATCGTTCAGGTGGTGGTGGTTTTGGGGGATTTGGTGGTTCGGATCGTTCAGGTGGTTTTGGAGGCTTTGGCTCAAGTCAATAA 1848 0.474 MLTTILRKTSSSAITRRALAAAIASTTDPVLNRVGSSFSSSAAVGELRRFSDLTGFLKGRAFHSNSGPLNFRSSFCSRAEFAVEDYAYEEGSRGNSADEGLEIAKLGISQDIVSALAKKGILKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIIDKIIQFNAKHGRGRNPLALVLAPTRELARQVEKEFQEAAPNLDTICVYGGTPISRQMRQLDYGVDIAVGTPGRIIDLLNRGALNLQEVQFVVLDEADQMLQVGFQEDVEKILERLPPKRQTLMFSATMPSWIKQITRNYLQDPLTIDLVGESDQKLADGISLYSIATDNYVKAGVLGPLITEHAKGGKCIVFTQTKRDADRLTYALAKTVQCEPLHGDISQAQRERTLAGFRSGYFNVLVATDVASRGLDIPNVDLVIHYDLPNSSEIFVHRSGRTGRAGKKGTAILVYTDDQSRAVRTIERDVGCRFSELPRIAVEPGSVDMGGGRFGSYGGGRDRRSGDSGFGRSSGFGRSGGYGNSGFGRSSYGNSGSSSSRFGDSGMSRPRGGFSGDSSGGSGFGRFGSSGGFGSGQSGSRSGGFSGSGGFGGSDRSGGGGFGGFGGSDRSGGFGGFGSSQ 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90814g00013 615 Gene3D - 102 310 IPR027417 -
Stsc90814g00013 615 MobiDBLite consensus disorder prediction 485 615 - -
Stsc90814g00013 615 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 99 479 - -
Stsc90814g00013 615 MobiDBLite consensus disorder prediction 512 539 - -
Stsc90814g00013 615 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 335 479 IPR001650 -
Stsc90814g00013 615 CDD DEADc 112 307 - -
Stsc90814g00013 615 SMART ultradead3 120 323 IPR014001 -
Stsc90814g00013 615 Gene3D - 334 479 IPR027417 -
Stsc90814g00013 615 Pfam DEAD/DEAH box helicase 125 294 IPR011545 GO:0003676|GO:0005524
Stsc90814g00013 615 CDD SF2_C_DEAD 320 449 - -
Stsc90814g00013 615 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 461 IPR027417 -
Stsc90814g00013 615 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 132 306 IPR014001 -
Stsc90814g00013 615 FunFam ATP-dependent RNA helicase RhlE 93 309 - -
Stsc90814g00013 615 Pfam Helicase conserved C-terminal domain 339 440 IPR001650 -
Stsc90814g00013 615 SMART helicmild6 360 440 IPR001650 -
Stsc90814g00013 615 MobiDBLite consensus disorder prediction 565 581 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90814g00013 Stsc-Chr90814 73267 77038 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90814g00013 106 472 Eukaryotic Initiation Factors Gene Family AT3G19760 33.693 1.11e-67 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90814g00013 - - ahf:112702088 872.078