Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90814g00009 ATGAAGCTTTCTTCCTCTGGGTTTAATCAACCAGCTGAAGAAGAAGGGGAGAAGAAAACTTTGAATTCGGAACTATGGCATGCATGTGCTGGCCCTCTGGTTTCTCTACCACCTGTTGGAAGTCGAGTAGTATACTTTCCTCAAGGTCACAGCGAGCAGGTAGCTGCTTCGACCAACAGGGAAGCAGATGCACGTATTCCGAATTACCCAAACCTGCCGCCCCAGCTTATCTGTCAGCTCCACAACGTAACGATGCATGCCGATGTGGAAACAGATGAAGTATATGCTCAGATGACTCTGCAGCCTCTAAGTCCACAAGAACAAAAGGATTTGTATCTACTTCCGGCAGAACTGGGTGCTCCCAGCAAACAACCAACCAACTACTTCTGTAAGACATTAACGGCTAGCGATACCAGCACTCATGGAGGATTTTCTGTTCCTCGAAGAGCAGCTGAAAAAGTCTTTCCTCCTCTTGATTACTCACTGCAGCCTCCTGCTCAAGAACTGATTGCTAGAGATCTGCATGATAATGAATGGAAATTCAGACATATATTTCGAGGTCAGCCCAAAAGGCATCTTCTTACTACTGGGTGGAGTGTCTTTGTCAGTGCTAAGAGGCTTGTTGCTGGTGATTCTGTCCTTTTCATATGGAATGAAAAAAATCAATTACTTTTGGGTATACGGAGAGCAAATCGTCCACAGACTGTCATGCCATCATCAGTTCTGTCAAGTGATAGCATGCACATTGGTCTCCTCGCTGCTGCAGCTCATGCAGCTGCCACAAACAGCCGTTTTACCATATTCTATAATCCTAGGGCAAGCCCTTCTGAATTTGTCATTCCCTTGACCAAGTATGTTAAAGCAGTGTATCATACACGAGTTTCTGTTGGTATGCGATTTAGGATGCTCTTCGAGACAGAAGAGTCAAGTGTCCGTCGATATATGGGTACCATAACAGGCATTAGTGATTTAGATTCAGTCCGCTGGCCAAATTCACACTGGCGTTCTGTAAAGGTTGGTTGGGATGAGTCTACGGCAGGGGATAGGCAACCAAGAGTCTCCTTGTGGGAGATTGAGCCTTTGACAACATTCCCAATGTATCCATCTCCATTCCCCTTGAAGTTGAGGCGTCCGTGGCCATCTGGACTACCTTCTTTATACGGTCTCAAGGATGGTGGTGACATGGGCATTAATTCTCCTTTCATGTGGCTCCAAAGTGGGCTTGGGGATCAAGGAATGCCATCATTGAACTTCCAGGGGCTCGGTGTTACACCGTGGATGCAGCCAAGATTTGATGCTTCTATGGCAGGACTCCAACCAGAGTTATACCAAGCAATGACTTCTGCTGCTTTCCAGGAAATGAGGACAATGGATCCTTCGAAACCTTCGTCCCAATCTCTGTTGCAGTTTCAGCAAGCTTCAAATGTTCCTTCTGCTTATGCATCTGAGATACAGAGACAAGTGTTACCACATTCTCAGTCCCAAAACGCCCTTCTACAACATTTTCAAGAAAATCAAGCACCTGCACCGTCACAAGTTTCGCAACAGCAGTTGCATCGTTACCACCCGTATAGTGATCAGAGACAACAGCAGCAGCAACTAAAAAATATGCCTGTTCAGCAGCAGTTACAGACTTTAGTCTCTCCTTTCTCTAATTTTGCATCCGCTACACAGCCTCAATCTCCATCCTTGCAAGCCTTAGCTTCACATTGCCAGCAGCAGAGCTTTCCTGAGCCGATCAGGAATCATGTTTCAAGCTCTGATGTTTCCCCTATCCATAGTCTACTAGGCTCATTCCCTCAGGATGGAGCATTGCAGTTACTTAACTTGAATGGACACAACTCTATCATGTCTTCTGGGGCCTTACTGCCGAAGCAAATAGCTGTTGAAACTCAGCTACCATCAGCTGGTGCTCAGTGTGTATTGCCTCCTCAGTTGGAAAATTTGGGAACATCACAATCAAATGTGTCTGAGCTAACTGCTTTGCCTCCATTTCCTGGAAGAGAGCATTCTGCATATCAAGGTGCAGCTGATGCTCACAGCAATCTTTTGTTTGGGATAAACATAGATCCTTCTTCTCTTATGCTGCAAAATGGCATGCAAAACCTGAGAAATATAGGCAATGTGAATGATTCATTGTCAATGCCATTTTCTTCTTCAAATTGTGGTGGTGCCACTGGCGCCGATTTCCCCCTAAGTTCAAACGTAACAGCTTCAAGTTGTGTCGATGAATCGGGATTCTTGCAGTCTTCTGAAAATGTAGACCAACCAAATACTCCAACTGGAACCTTTGTGAAGGTTCACAAGTCAGGATCCTTAGGCAGGTCACTGGACATTTCGAAGTTCAGCAGCTATGACGAGCTGCGCAGTGAACTTGCTCGCTTATTTGGCCTCGAAGGCCAACTAGAGGATCCTCAGAGATCAGGCTGGCAGCTTGTATTCGTTGACCGAGAGAATGACATTCTCCTTCTTGGTGATGATCCCTGGCAGGAGTTTGTGAACAGTGTATGGTCCATTAAGATATTATCTCCACTTGAAGTTCAACAAATGGGGAAGGGTGTTGCTCCTTCTACTTAA 2577 0.4571 MKLSSSGFNQPAEEEGEKKTLNSELWHACAGPLVSLPPVGSRVVYFPQGHSEQVAASTNREADARIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPQEQKDLYLLPAELGAPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSLQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLTKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVKVGWDESTAGDRQPRVSLWEIEPLTTFPMYPSPFPLKLRRPWPSGLPSLYGLKDGGDMGINSPFMWLQSGLGDQGMPSLNFQGLGVTPWMQPRFDASMAGLQPELYQAMTSAAFQEMRTMDPSKPSSQSLLQFQQASNVPSAYASEIQRQVLPHSQSQNALLQHFQENQAPAPSQVSQQQLHRYHPYSDQRQQQQQLKNMPVQQQLQTLVSPFSNFASATQPQSPSLQALASHCQQQSFPEPIRNHVSSSDVSPIHSLLGSFPQDGALQLLNLNGHNSIMSSGALLPKQIAVETQLPSAGAQCVLPPQLENLGTSQSNVSELTALPPFPGREHSAYQGAADAHSNLLFGINIDPSSLMLQNGMQNLRNIGNVNDSLSMPFSSSNCGGATGADFPLSSNVTASSCVDESGFLQSSENVDQPNTPTGTFVKVHKSGSLGRSLDISKFSSYDELRSELARLFGLEGQLEDPQRSGWQLVFVDRENDILLLGDDPWQEFVNSVWSIKILSPLEVQQMGKGVAPST 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90814g00009 858 SUPERFAMILY DNA-binding pseudobarrel domain 114 258 IPR015300 -
Stsc90814g00009 858 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 852 IPR044835 GO:0003677|GO:0006355|GO:0009725
Stsc90814g00009 858 Pfam B3 DNA binding domain 129 230 IPR003340 GO:0003677
Stsc90814g00009 858 ProSiteProfiles PB1 domain profile. 762 846 IPR000270 GO:0005515
Stsc90814g00009 858 ProSiteProfiles B3 DNA-binding domain profile. 129 231 IPR003340 GO:0003677
Stsc90814g00009 858 Pfam Auxin response factor 255 338 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Stsc90814g00009 858 CDD B3_DNA 128 229 IPR003340 GO:0003677
Stsc90814g00009 858 FunFam Auxin response factor 758 851 - -
Stsc90814g00009 858 Gene3D - 293 365 - -
Stsc90814g00009 858 Pfam AUX/IAA family 754 844 IPR033389 -
Stsc90814g00009 858 SUPERFAMILY CAD & PB1 domains 755 840 - -
Stsc90814g00009 858 Gene3D - 127 230 IPR015300 -
Stsc90814g00009 858 MobiDBLite consensus disorder prediction 505 538 - -
Stsc90814g00009 858 FunFam Auxin response factor 293 365 - -
Stsc90814g00009 858 Gene3D - 759 851 - -
Stsc90814g00009 858 FunFam Auxin response factor 127 231 - -
Stsc90814g00009 858 SMART B3_2 129 231 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90814g00009 Stsc-Chr90814 45588 50788 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90814g00009 98 851 B3 DNA Binding Superfamily AT5G37020 54.868 0.0 685
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Stsc90814g00009 AUX_IAA 1.8e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90814g00009 - - gmx:100809105 1513.43