Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90814g00002 ATGAACAACAGCAGCACTATTCCTGGTTGGAACTTTGAGAGTGATGCCTGTGTCATCAATCAGAAGAGTCCAATAGGGCTGGACCAAGATCTTGTAGAGCTGCTATGGAAAAACGGGCAAGTAGTATTGAGCAGCCAAACACAAAGGAAACCAGTTCAGAAAAATGATGCATCAACAACAATAAGGAATAATGGTGTTCATTTTGGGAATTCAAGTAACAATTTGAGTCAACAAGAAGATGAGACTGCTTCATGGATTCAATACCAAGTTGATGATGATCATCCAATGGGACAAGAGCTTTGCTCATCAAATCTTCTATCTCAGTTGACACCTTGTGAAGTTGAGTCTTACAAGCCAATCAGCAAGCAATTGGAAGAAGCAAAGTTTGCAAAATTTGCTACCCCAAATAATGCAAATTTAAATCCACAACAAAAACCAATGATAAATCCTATGCCTGCTCCAAGATTCCATGTTGTTCCTGAGAGAACCAACAATGACTTTGTTGGTAGATCATCATCATCATCACAACAGAAGGTTCCAAAGTTTTCTCATCATTTTTCAGCACCCTTAATTGCACAACAAAAGTTCAGGGAGAAAGTTAATAATGGTAACAACAACAATGTGCCACAAAGTGAGGGGAGGGAGTGTTCAGTTATGACAGTTGGGTCAAGTCACTGTGGCAGTAACAACATCATCCCTCAGGAACAAGATACCACTTTCTCTGAAGCAGTTAAAGATTGTGTTCAGAGAAGTAGTGTTCCTAATTGGAGTGGTAACAATAAGGGGAAATCATCTGAGATGATTGAAGCAACTGTGACTTCTTCTTCTGGTGGCTCTGGTAGTAGTCTTGGAAAAACAACTTGTTCTTTATCAACAGGAAATCATCTTGGCCTAAAGAGGAAAATCACAGATGCAGATGAATCAGAAGAACAAAGTGAGGCCACAGAGCCTAAATCAGGTGCTGGAAACAAAGCATCTCAGAGATCAGGATCTTCTAGAAGGAACCGTGCAGCAGAAAGAAGAAGAGATAGGATCAATGAGAAAATGAGAACACTCCAACAACTCATACCAAACAGTAATAAGACAGACAAAGCATCAATGCTAGAAGAGGCAATTGAATACTTGAAGTCACTTCAGTTACAGCTTCAGGTGATGTGGATGGGGGCAGGGATGACACCAGTGATGTTTCCAGGGATTCAGCATTACATGTCACAAATGAGTGCAATGGGAATGGCTGCAGCAGCAACACAACCTTCTCCTCTGCCTTCAATGCAAATACCAAGAATGCCCCTTGATCATCAATCCAACATGAACATGCCTTCTGTTTCTGTTTCTGTGCCACCACCATCAAGCCAGGCTTTGATGTGCCAAAATCCAGCAGTTTTGGGTGCATTTAATTACCAAAATCATCAGATGCAGAATCCATGCCTTGCAGAGCAATATGCACGTTACATGGCTTATCATCATCTCATGCAAACTGCATCTCAGCCAATGAATGTATTTGGATATGGTTCCCAGGCTGTTCAACAGAGTAGTCAAGCAATGATGCCACCAAGCAATAGCAACAGCAATAGCAATGGGGCCATGAATAATGTTGCACCTAATTTTGAAGATCCTATCAATGCCAAAATGGGCTCTTCCACCTTTCAACAACTCAACATACAGTAA 1668 0.4119 MNNSSTIPGWNFESDACVINQKSPIGLDQDLVELLWKNGQVVLSSQTQRKPVQKNDASTTIRNNGVHFGNSSNNLSQQEDETASWIQYQVDDDHPMGQELCSSNLLSQLTPCEVESYKPISKQLEEAKFAKFATPNNANLNPQQKPMINPMPAPRFHVVPERTNNDFVGRSSSSSQQKVPKFSHHFSAPLIAQQKFREKVNNGNNNNVPQSEGRECSVMTVGSSHCGSNNIIPQEQDTTFSEAVKDCVQRSSVPNWSGNNKGKSSEMIEATVTSSSGGSGSSLGKTTCSLSTGNHLGLKRKITDADESEEQSEATEPKSGAGNKASQRSGSSRRNRAAERRRDRINEKMRTLQQLIPNSNKTDKASMLEEAIEYLKSLQLQLQVMWMGAGMTPVMFPGIQHYMSQMSAMGMAAAATQPSPLPSMQIPRMPLDHQSNMNMPSVSVSVPPPSSQALMCQNPAVLGAFNYQNHQMQNPCLAEQYARYMAYHHLMQTASQPMNVFGYGSQAVQQSSQAMMPPSNSNSNSNGAMNNVAPNFEDPINAKMGSSTFQQLNIQ 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90814g00002 555 SMART finulus 336 384 IPR011598 GO:0046983
Stsc90814g00002 555 MobiDBLite consensus disorder prediction 251 290 - -
Stsc90814g00002 555 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 329 378 IPR011598 GO:0046983
Stsc90814g00002 555 MobiDBLite consensus disorder prediction 333 348 - -
Stsc90814g00002 555 Coils Coil 335 355 - -
Stsc90814g00002 555 MobiDBLite consensus disorder prediction 303 348 - -
Stsc90814g00002 555 Pfam Helix-loop-helix DNA-binding domain 334 379 IPR011598 GO:0046983
Stsc90814g00002 555 MobiDBLite consensus disorder prediction 45 80 - -
Stsc90814g00002 555 PANTHER TRANSCRIPTION FACTOR PIF3 19 525 IPR044273 GO:0003700|GO:0006355
Stsc90814g00002 555 Gene3D - 325 385 IPR036638 GO:0046983
Stsc90814g00002 555 MobiDBLite consensus disorder prediction 315 332 - -
Stsc90814g00002 555 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 333 392 IPR036638 GO:0046983
Stsc90814g00002 555 CDD bHLH_AtPIF_like 345 392 IPR047265 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90814g00002 Stsc-Chr90814 16150 20067 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90814g00002 9 525 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G43010 31.903 1.50e-47 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc90814g00002 HLH 4.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90814g00002 K16189 - gmx:100811777 439.884