Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90811g00010 ATGTCGTCTCCGGCGCCGGAGGCTCCTCCGGAAACTAACTCCACCGCCTCATCTCCGCCGACTCTGGTTGCACCAACCACGTCGACCATTGTCACCGCCTCCCCGCCGTCGCCGGCGCTCGTAACCCCCGCACCTACGTCGGCGAACTCAACTCCGTTTGTTCCGGCGACTCCGTTGGATAACAATGGGTTGCCGAGGGGTACATTGACGGGAATCATAATAGGGGCGGTTTTGGGTTCTTTGGCGATGCTTATCGTTGGGGGCATTTTCGTCTTTTTTTACAGAAGGGCGAAGAGGAAGAGGAAGAGGAATCAAGGTTTTGAGCAGAGTAACTACTATGGTGCTCCTCCTCAACCGAAAGTTGACCAGGTTAGTGGCTTACCTCAGCAATGGCAAAGTATTCCTTCTCTTTCTACAGATGGTAAAGGAGGGCTGCCTCCGAAACCCCATGGGGTTGCGGCAAATCACCATAAGACACCATCTGCTAGTAGTCTTGCCACACCACCTGTGTATTCTTCTGCTACCAGCACTGGTATTGGGTCCGAGCGGCCATACATTTCTCAGTCTTCTGGCATGTCTTTTCCTCTATCTCAGAGTAGTTTTACCTATGATGAGTTGGCAATGGCAACAGAAGGGTTCTCCGGCTCGAATCTTCTCGGTCAAGGTGGTTTTGGCTATGTTCACAAAGGAGTTCTTCCGAATGGAAAAACTATTGCTGTTAAGCAGCTGAAATCCGAGAGTAAACAGGGGGAGCGTGAGTTCCATGCAGAAGTTGATGTCATTAGCCGTGTCCATCACCGGCATCTTGTCTCCCTAGTTGGATACTGCATCTCAGGTGGCCAGAGGATGCTTGTTTATGAGTTTGTGCCAAATAAAACACTTGAGTTTCATTTGCATGCAAAGGACAGACCGACTATGGACTGGTCAACGAGGATGAAGATTGCAATTGGAGCTGCAAAGGGATTGGCATACCTGCATGAGGATTGTCACCCCAAAATCATACATCGGGACATTAAAGCATCAAATATCCTTATTGATGATCTTTTTGAGGCAAAGGTTGCAGATTTTGGACTAGCCAAATTTTCGACAGACACGGATACCCATGTCTCTACTCGAGTGATGGGAACCTTTGGATACCTGGCTCCTGAATATGCTGCTAGTGGGAAACTCACAGAGAAGTCAGATGTTTTCTCCTATGGTGTTGTGCTTTTGGAGTTGATAACCGGACGAAAACCTGTTGATAAAACTGAATCTTTCACAGATGACAGCATGGTTGAATGGGCAAGGCCCTTACTTTCCCAAGCTTTGGAAAATGGAAATTTTAGTGGACTTCTAGATCCAAGGTTGGAGACAAATTATGATCCTGACGAGTTGACTCGAATAACTGCATGTGCTGCAACGTGTGTAAGACATTCAGCCAGGCGTCGGCCTCGAATGAGCCAGGTTGTTCGAGCTCTAGAAGGAAATATTTCGCTAGAGGATCTATACGAGGGGGGCACACCGGGGCACAGCCGAGTTTTTGGTTCCTTCGAGAGTATAAACTATGACTCTGGTCAATACAATGAAGACCTAAAGAAGTTCAGGAAGCTGGCACTGGAAAGCCAAGAGCAAGGCACTAGCTACAGTGGACCGAGCAGTGAGTACGGTCAACCTCCGTCTGCCTCGACCAGTTCAGGCCTGCAAAATACACAAGAGATGGAAAGGGGGAATGCAAAAGGTGGTACTAATAACGATGGTTCTGGTGCGAAGTCATGA 1755 0.4855 MSSPAPEAPPETNSTASSPPTLVAPTTSTIVTASPPSPALVTPAPTSANSTPFVPATPLDNNGLPRGTLTGIIIGAVLGSLAMLIVGGIFVFFYRRAKRKRKRNQGFEQSNYYGAPPQPKVDQVSGLPQQWQSIPSLSTDGKGGLPPKPHGVAANHHKTPSASSLATPPVYSSATSTGIGSERPYISQSSGMSFPLSQSSFTYDELAMATEGFSGSNLLGQGGFGYVHKGVLPNGKTIAVKQLKSESKQGEREFHAEVDVISRVHHRHLVSLVGYCISGGQRMLVYEFVPNKTLEFHLHAKDRPTMDWSTRMKIAIGAAKGLAYLHEDCHPKIIHRDIKASNILIDDLFEAKVADFGLAKFSTDTDTHVSTRVMGTFGYLAPEYAASGKLTEKSDVFSYGVVLLELITGRKPVDKTESFTDDSMVEWARPLLSQALENGNFSGLLDPRLETNYDPDELTRITACAATCVRHSARRRPRMSQVVRALEGNISLEDLYEGGTPGHSRVFGSFESINYDSGQYNEDLKKFRKLALESQEQGTSYSGPSSEYGQPPSASTSSGLQNTQEMERGNAKGGTNNDGSGAKS 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90811g00010 584 Gene3D Transferase(Phosphotransferase) domain 1 289 495 - -
Stsc90811g00010 584 FunFam Proline-rich receptor-like protein kinase PERK8 185 288 - -
Stsc90811g00010 584 MobiDBLite consensus disorder prediction 533 584 - -
Stsc90811g00010 584 Pfam Protein tyrosine and serine/threonine kinase 217 486 IPR001245 GO:0004672|GO:0006468
Stsc90811g00010 584 SMART serkin_6 213 461 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90811g00010 584 ProSitePatterns Serine/Threonine protein kinases active-site signature. 333 345 IPR008271 GO:0004672|GO:0006468
Stsc90811g00010 584 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 83 535 IPR047117 -
Stsc90811g00010 584 MobiDBLite consensus disorder prediction 1 36 - -
Stsc90811g00010 584 ProSitePatterns Protein kinases ATP-binding region signature. 219 241 IPR017441 GO:0005524
Stsc90811g00010 584 MobiDBLite consensus disorder prediction 1 54 - -
Stsc90811g00010 584 ProSiteProfiles Protein kinase domain profile. 213 492 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90811g00010 584 MobiDBLite consensus disorder prediction 103 184 - -
Stsc90811g00010 584 CDD TM_EGFR-like 66 94 - -
Stsc90811g00010 584 SUPERFAMILY Protein kinase-like (PK-like) 185 486 IPR011009 -
Stsc90811g00010 584 Gene3D Phosphorylase Kinase; domain 1 179 288 - -
Stsc90811g00010 584 FunFam Proline-rich receptor-like protein kinase PERK1 289 497 - -
Stsc90811g00010 584 MobiDBLite consensus disorder prediction 157 184 - -
Stsc90811g00010 584 MobiDBLite consensus disorder prediction 123 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90811g00010 Stsc-Chr90811 53813 57801 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90811g00010 45 546 Trihelix Transcription Factor Family AT1G70460 50.690 8.38e-156 461
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Stsc90811g00010 PK_Tyr_Ser-Thr 7.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90811g00010 - - aip:107617256 925.62