Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90811g00004 ATGGACATGTCTTCAAACACCAATAAGGACTTGTTCTCCTCTCCAACTCTCTCCCTCACCCTTGCTGGGATTTTTAACCAAGCTGAGGAACAAGGTGACGATGGGGGAAGTAGAGAGTGTTCAAGGAAAGAGGACACCATCATCACCACGACCACCGTTGATGTGAGCAGCGAGAATTCTGGGCCTTTGAGATCAAGGTCGGAGGATGATGCTAATCAAGGAGATGATGACGACGGCGGTGATGATGATCCGAGCAGGAAGAAGAAGAGGAAGAAATACCATAGGCACACGGCTGAACAAATCAGAGAAATGGAAGCGGTTTTCAAAGAATCACCACATCCAGATGAAAAACAAAGGCAACAACTCAGCAAGCAATTAGGCCTTGCTCCAACCCAAGTCAAGTTTTGGTTCCAAAATCGTCGAACCCAAATAAAGGCAATACAAGAACGACATGAAAGTTCATTGTTGAAGAAAGAAATAGAGAAACTAATGGAGGAAAATAAGGCCATGAGAGAGGCATTAAGCAAATCTTGTTGCCCTAATTGTGGCATGGCCACCACTTCTACTGTCACTGATGATGGCTCCACCATCTCCATTGAAGAACAACAACTTCGGTTAGAAAATGATAAACTCAAAGCTGAGGTAGAGAAGCTACGAGAAGTTTTAGGGAAAAACCCATCAGCTGGAACAATGTATCCTTCATGTTCTTCTAGCCATGAGCAAGATAATAATAATGGAATAATAAGCTCATCAATGGAATTTTACAATGGAATTTTTGGGGTTGAAAAATCAAGGATAATGGAGATAGTGAACGAAGCAATGGAGGAACTCATAAAGATGGCTAATATTGGAGAACCATTATGGGTTCGTAGTGTTGAAACTGGCAGAGAAATACTCAACTATGATGAATATGAGAAGGTTTTTGAGGTTCACAATAATTCAAGAATTATTGGAAGAAGGTCAAACTTGTCCATTGAAGCATCAAGAGAAAATGGGATTGTTTTTATGGATCTACCAAGGCTTGTCCAAAGTTTTCTAGATGTGAATCAATGGAAGGAGATGTTTCCATGCTTAATATCAAAGGCTGCAACGGTTGATGTTATATGCAATGGAGAAGGATCTAACAGCAATGGTGCTGTGCAACTGATGTTTGCTGAGTTGCAAATGCTGACTCCAATGGTGGCAAGTCGAGAAGTGTATTTCGTGAGATGCTGCAAAGAGTTGAGTGATGAAAAGTGGGGAATTGTTGATGTTTCAATAGACAAAGTGGAAGACACCATAGATGCATCCCTTCTTAAATGCAGAAAACGCCCTTCTGGCTGCATTATTGAGGATCACTCCAATGGTCATTGCAAGGTAAGTTGGGTGGAACACTGGGAATGTGAGAAAAGCAGTGTCCATAGAATGTATAGAAGCATTGTGAATAATGGTGCAGCTTTTGGGGCAAGGCATTGGATATCAACACTTCAACTTCAATCTCAACGTGTTGCTACGTCAGCTGGAAGAAAGAGCATATTGACTTTGTCTGAAAGAATGAGAAGGAGTTTCTGCCATGCAGTTGGAGCCTCAAGCTTCCATAGATGGACAAAGGTGACAAGTAAAAATGGAGAAGACATTAGGATCAGTTCTAGGAAGAACTTGAATGATCATGGTGAACCTCTTGGTGTGATCTTATCAGCTGTTTCTTCAGTGTGGCTTCCTCTCTCTCCCAATCTTCTTTTCCATTTCTTGAGGGATGAAAACCATAGGTCTCAGTGGGATATCATGGTCACTACTGGTGGGTCATCGGTGCAGTCCATAGCCACTTTAGCTAAAGGCCAAGATCGGGGCAATTCTGTAAATATCCATGAGATTACATCAAAAGAAAACATAAAGTGGATACTACAAGATAGCTCGAGAAATGGTTATGAATCAATGATAGTATATGCTCCTGTTGACATTCCTAGCATGAAGAATGTGATTAATGGATGTGATTCAAGCAACATTGCAATATTACCATCAGGCTTCTCTATTCTCCCTGATGGGCTTAATGCAAGGCCATTGCTCATTACTTCATCAACTACTATGATGCATCAACAAGAAGACCAAGAAGAAAATAAGAACACTACTACTGATGAAGAAGGAGGGTCTTTGTTAACAATGGCATTCCAAGTAATTACTAATAGTAATAATAATGGTTCTCCATCATCAGCAAAATTGACTTTGGAGTCTGTGGAATCAGTCAAGAGTTTGGTTTCTTGTACATTAAGGAATATCAAAACATGTTTACAATGTGAAGAAGATTGA 2286 0.4059 MDMSSNTNKDLFSSPTLSLTLAGIFNQAEEQGDDGGSRECSRKEDTIITTTTVDVSSENSGPLRSRSEDDANQGDDDDGGDDDPSRKKKRKKYHRHTAEQIREMEAVFKESPHPDEKQRQQLSKQLGLAPTQVKFWFQNRRTQIKAIQERHESSLLKKEIEKLMEENKAMREALSKSCCPNCGMATTSTVTDDGSTISIEEQQLRLENDKLKAEVEKLREVLGKNPSAGTMYPSCSSSHEQDNNNGIISSSMEFYNGIFGVEKSRIMEIVNEAMEELIKMANIGEPLWVRSVETGREILNYDEYEKVFEVHNNSRIIGRRSNLSIEASRENGIVFMDLPRLVQSFLDVNQWKEMFPCLISKAATVDVICNGEGSNSNGAVQLMFAELQMLTPMVASREVYFVRCCKELSDEKWGIVDVSIDKVEDTIDASLLKCRKRPSGCIIEDHSNGHCKVSWVEHWECEKSSVHRMYRSIVNNGAAFGARHWISTLQLQSQRVATSAGRKSILTLSERMRRSFCHAVGASSFHRWTKVTSKNGEDIRISSRKNLNDHGEPLGVILSAVSSVWLPLSPNLLFHFLRDENHRSQWDIMVTTGGSSVQSIATLAKGQDRGNSVNIHEITSKENIKWILQDSSRNGYESMIVYAPVDIPSMKNVINGCDSSNIAILPSGFSILPDGLNARPLLITSSTTMMHQQEDQEENKNTTTDEEGGSLLTMAFQVITNSNNNGSPSSAKLTLESVESVKSLVSCTLRNIKTCLQCEED 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90811g00004 761 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 88 756 IPR042160 -
Stsc90811g00004 761 CDD START_ArGLABRA2_like 263 494 - -
Stsc90811g00004 761 Pfam START domain 269 494 IPR002913 GO:0008289
Stsc90811g00004 761 ProSitePatterns 'Homeobox' domain signature. 122 145 IPR017970 GO:0000981|GO:0006355
Stsc90811g00004 761 FunFam Homeobox-leucine zipper protein HDG1 74 163 - -
Stsc90811g00004 761 Gene3D - 78 165 - -
Stsc90811g00004 761 SMART HOX_1 89 151 IPR001356 GO:0003677
Stsc90811g00004 761 MobiDBLite consensus disorder prediction 46 62 - -
Stsc90811g00004 761 SUPERFAMILY Homeodomain-like 76 148 IPR009057 -
Stsc90811g00004 761 MobiDBLite consensus disorder prediction 23 99 - -
Stsc90811g00004 761 SUPERFAMILY Bet v1-like 500 677 - -
Stsc90811g00004 761 FunFam Homeobox-leucine zipper protein GLABRA 2 268 494 - -
Stsc90811g00004 761 SUPERFAMILY Bet v1-like 262 495 - -
Stsc90811g00004 761 CDD homeodomain 94 145 IPR001356 GO:0003677
Stsc90811g00004 761 ProSiteProfiles 'Homeobox' domain profile. 87 147 IPR001356 GO:0003677
Stsc90811g00004 761 Pfam Homeodomain 90 145 IPR001356 GO:0003677
Stsc90811g00004 761 SMART START_1 268 495 IPR002913 GO:0008289
Stsc90811g00004 761 Coils Coil 201 221 - -
Stsc90811g00004 761 Coils Coil 146 176 - -
Stsc90811g00004 761 ProSiteProfiles START domain profile. 259 498 IPR002913 GO:0008289
Stsc90811g00004 761 Gene3D - 268 497 IPR023393 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90811g00004 Stsc-Chr90811 20706 31681 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90811g00004 55 760 Homeobox Transcription Factor Family AT1G79840 58.209 0.0 798
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Stsc90811g00004 START 1.1e-51 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90811g00004 K09338 - tcc:18595949 969.533