Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90807g00011 ATGCCAGAGGCAAGCAGAGTTGATTCTTTTTGTTTGTCTGACTTTGATCAATCAGTTGGAAATCACTTGGAGAATGCCGTCGAATTGAATGGAAATCCTGTAAATAACTTGCTGAAAGTTAGTAGCCAGACGATTTCTCCTGGTCCTGTTCACCTTGGTACTTCTGATCGGTTGCCAACTTCAGTTGATAAAGGCCAATTTACATACCTAGAAGACCGATTGAGCTTGCTGGCACAAAAGGTTCGATCAACAAATCAAGTGATAATACCAAGCGGTGATACAGAAAACCAAGAAGGTTCAGTCATGGCAGATGGCAGTCCCAGAACTGATATTTCTACAGATGCTGATACTGATGAGAAGAATCAGCGGTTTGATGGAGGTCAATCCCTTGCTGTTGGGGGTTCTGACTCAAGTGACAGATCGAAGGATAAAACAGATCAGAAGACTCTTCGCAGGCTTGCTCAGAATCGTGAGGCTGCAAGGAAAAGCCGATTGCGAAAGAAAGCTTATGTTCAACAGTTGGAAAGTAGTCGTTTGAAGTTGACGCAATTGGAGCAAGAGCTTCAGCGAGCCAGGCAGCAGGGAATCTTCATATCAAGTTCAGGTGATCAAGCGCATTCGATGAGCGGAAATGGGGCCATGGCATTTGATGTAGAATACGCGAGGTGGCTGGAAGAGCAGAATCGACAAATTAATGAGCTTAGAGCTGCTGTAAATTCCCACGCAAGTGATACGGAACTTCGAATGATTATTGATGGTGTATTGGCACATTATGATGAGATATTTCGACTGAAGGGCACTGCAGCTAAGGCTGATGTCTTCCACCTGTTGTCTGGCATGTGGAAAACCCCAGCCGAGAGGTGTTTTCTCTGGCTTGGTGGTTTTCGATCATCAGAACTCCTTAAGCTCCTGGTAAATCAATTGGAACCTCTCACAGAGCAGCAGTTGGTGGGTATTACCAACTTACAGCAATCTTCTCAACAGGCAGAAGATGCATTGTCTCAGGGCATGGAAGCACTGCAACAATCCCTTTCGGAGACTTTGTCCTCTGGATCACTTGGCTCATCCGGTTCGTCAGGGAACGTCGCGAATTACATGGGTCAAATGGCCATGGCCATGGGTAAGCTAGGGACACTCGAGGGGTTTATTCGGCAGGTAAGGTTTTCTTACATGCACACCTTTAGGTTGAGTTTGGTACAATTCTTTTGA 1209 0.4566 MPEASRVDSFCLSDFDQSVGNHLENAVELNGNPVNNLLKVSSQTISPGPVHLGTSDRLPTSVDKGQFTYLEDRLSLLAQKVRSTNQVIIPSGDTENQEGSVMADGSPRTDISTDADTDEKNQRFDGGQSLAVGGSDSSDRSKDKTDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQAHSMSGNGAMAFDVEYARWLEEQNRQINELRAAVNSHASDTELRMIIDGVLAHYDEIFRLKGTAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLVNQLEPLTEQQLVGITNLQQSSQQAEDALSQGMEALQQSLSETLSSGSLGSSGSSGNVANYMGQMAMAMGKLGTLEGFIRQVRFSYMHTFRLSLVQFF 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90807g00011 402 SUPERFAMILY Leucine zipper domain 148 191 IPR046347 GO:0003700|GO:0006355
Stsc90807g00011 402 ProSiteProfiles DOG1 domain profile. 213 402 IPR025422 GO:0006351|GO:0043565
Stsc90807g00011 402 SMART brlzneu 144 207 IPR004827 GO:0003700|GO:0006355
Stsc90807g00011 402 MobiDBLite consensus disorder prediction 88 150 - -
Stsc90807g00011 402 FunFam BZIP family transcription factor 147 196 - -
Stsc90807g00011 402 PANTHER TRANSCRIPTION FACTOR TGA9 91 386 - -
Stsc90807g00011 402 Coils Coil 167 194 - -
Stsc90807g00011 402 Pfam Seed dormancy control 230 305 IPR025422 GO:0006351|GO:0043565
Stsc90807g00011 402 Coils Coil 224 244 - -
Stsc90807g00011 402 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 151 166 IPR004827 GO:0003700|GO:0006355
Stsc90807g00011 402 Pfam bZIP transcription factor 148 188 IPR004827 GO:0003700|GO:0006355
Stsc90807g00011 402 Gene3D - 147 199 - -
Stsc90807g00011 402 CDD bZIP_HBP1b-like 148 200 - -
Stsc90807g00011 402 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 146 190 IPR004827 GO:0003700|GO:0006355
Stsc90807g00011 402 MobiDBLite consensus disorder prediction 88 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90807g00011 Stsc-Chr90807 67311 72676 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90807g00011 102 386 bZIP Transcription Factor Family AT3G12250 77.193 4.70e-156 441
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Stsc90807g00011 DOG1 9.4e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90807g00011 K14431 - gmx:100816123 561.222