Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90807g00005 ATGGCTTCCAACGGTATGCAAAACCAAGAAGAACTGCTTTCCAAGCAAATCAAACACGAAGAAGAAGAATATGATGATGATGATGATGATGATGAAGAAGGCGAAGAAGGATGGGACGACTGGGAAGGAGACGAGGGAGATCCACAATCGGAATTGCTCTGCCTCTTCTGTCATTCTAAATTCGCTTCTTGCGATTCCCTTTTCGATCATTGCTCTTCCATTCACCACTTCGATTTCCATGCCATTCGAAAATCTCTTTCCTTCGATTTCTATTCCTCCTTCAAGCTTATTAACTATATCCGCTCTCAGGTGGCAGATAACAAATGTTGGAGTTGTGGTTCGACGTGTCAGTCTAACCAAGACTTGCAGAATCATTTGCATGATGCAATTGACTTAAGTGATATAAAGACCAAGTGGGATGATGATAGATATTTAAAACCTTTTATGCTAGATGATTCGCTCTTGTACAGTTTTGTTGATTATGAAGATGTGGAAGATGAGCAAATTCCACCAATGGATGAAGATCTTATGGTGGATTTGAAGAACTCTATAGAAACTCTTGATTTGAAAAAAGTGGTAGTTACTGATGGTGTATATGATACTAGTAGCAGCAAGAAGGTTGCTTCTGTTCCTAATGATCATTTGAACCAGGAGAATTCTTCAGAAAAGGAATTAGTTAATGGTAAGAACTCTAGACCATATGTTCAACCAATTGACAAGGCTAAAGACGAAGGGCTCTTGATGGCTAAATCTCGAAATCACATGGAAAAGCAGATTAAGATGGTTAATGAAAGTTACTTTGGGTCTTATAGCTCATACGGAATCCACCGTGAGATGTTAAGTGACAAGGTGAGAATGGATGCTTATGGCCAAGCAATTTTGAAAAATCCCTCTCTCCTAAATGGTGCTGTGGTTATGGATGTAGGTTGTGGAACTGGCATCCTGAGCCTATTTGCAGCTCGAGCAGGGGCTTCACGGGTCATTGCAGTTGAGGCTAGTACCAAGATGGCCGCAGTAGCATCTCAGGTTGCAAAAGATAATGGTCTCTGGCTGGATAAAAGCCACTGTGGTGTGAATGGCCTTCAAAAGGGAGTGGTAGAAGTGATTCATGGTATGATTGAAGAAATTGACAAAATTGTTGAAATTAAACCTCAAAGTATTGACGTATTGTTAAGTGAATGGATGGGTTATTGCCTACTGTATGAATCCATGCTTGATTCTGTGCTCTACGCACGAGACCGGTGGTTGAAGACTGGAGGTGCCATTCTTCCTGACACAGCAACTATTTTTGTTGCAGGATTCGGAAAAGGTGGCACAAGTCTTCCATTTTGGGAAGATGTGTGTGAATTTGACATGTCTTGCATTGGGAAGGAACTTGTCAAAGATGCGGCCCAAATTCCTATAGTCGATATTGTGGACTCTCAAGATTTAGTTACCAGTTCTGCAGTTCTTCAGAGCTTTGATTTGGCAACCATGAAGCCTAATGAAGTTAATTTCACTGCAACTGCTACTTTGGAACCAAAGTCAAGTGTTTCGGAAAACAAAGAAACACATGCAGATTCTGAAACATGCTGCCGGTGTTACGGAGTTGTCCTATGGTTTGAAACTGGATTTACAAGCAGATTCTGCCTGGAAGCGCCAACTGTGTTATCGACATCTCCGTACACACCAAAAACACATTGGTCACAAACAATCTTAACCTTTAAGGAACCCATTGCAATTGGATTTGGAACCGGAAACAATGGTGATCTGGCAGCGATTGGCACTGAGGACTTTCCTGCTGCAAAGGTTGATTTGCGTGTCAGCATCGTACGTTCCACGGAGCATCGCAGTATTGATATTTCGTTAGAAGTTGTTGGTGTTAGTCCTGATGGCCAGAGACGCAGTTGGCCAGCTCAATTTTTTTCTTTGCAGTAG 1917 0.4184 MASNGMQNQEELLSKQIKHEEEEYDDDDDDDEEGEEGWDDWEGDEGDPQSELLCLFCHSKFASCDSLFDHCSSIHHFDFHAIRKSLSFDFYSSFKLINYIRSQVADNKCWSCGSTCQSNQDLQNHLHDAIDLSDIKTKWDDDRYLKPFMLDDSLLYSFVDYEDVEDEQIPPMDEDLMVDLKNSIETLDLKKVVVTDGVYDTSSSKKVASVPNDHLNQENSSEKELVNGKNSRPYVQPIDKAKDEGLLMAKSRNHMEKQIKMVNESYFGSYSSYGIHREMLSDKVRMDAYGQAILKNPSLLNGAVVMDVGCGTGILSLFAARAGASRVIAVEASTKMAAVASQVAKDNGLWLDKSHCGVNGLQKGVVEVIHGMIEEIDKIVEIKPQSIDVLLSEWMGYCLLYESMLDSVLYARDRWLKTGGAILPDTATIFVAGFGKGGTSLPFWEDVCEFDMSCIGKELVKDAAQIPIVDIVDSQDLVTSSAVLQSFDLATMKPNEVNFTATATLEPKSSVSENKETHADSETCCRCYGVVLWFETGFTSRFCLEAPTVLSTSPYTPKTHWSQTILTFKEPIAIGFGTGNNGDLAAIGTEDFPAAKVDLRVSIVRSTEHRSIDISLEVVGVSPDGQRRSWPAQFFSLQ 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90807g00005 638 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 269 577 IPR029063 -
Stsc90807g00005 638 FunFam Protein arginine N-methyltransferase 6 259 424 - -
Stsc90807g00005 638 MobiDBLite consensus disorder prediction 22 46 - -
Stsc90807g00005 638 CDD AdoMet_MTases 305 423 - -
Stsc90807g00005 638 Gene3D - 426 630 - -
Stsc90807g00005 638 MobiDBLite consensus disorder prediction 205 231 - -
Stsc90807g00005 638 MobiDBLite consensus disorder prediction 1 46 - -
Stsc90807g00005 638 ProSiteProfiles SAM-dependent methyltransferase PRMT-type domain profile. 263 595 IPR025799 GO:0016274|GO:0018216
Stsc90807g00005 638 Coils Coil 3 23 - -
Stsc90807g00005 638 MobiDBLite consensus disorder prediction 205 227 - -
Stsc90807g00005 638 Gene3D Vaccinia Virus protein VP39 255 424 IPR029063 -
Stsc90807g00005 638 Pfam C2H2 type zinc-finger (2 copies) 54 128 IPR041661 -
Stsc90807g00005 638 SUPERFAMILY beta-beta-alpha zinc fingers 33 165 IPR036236 -
Stsc90807g00005 638 Pfam Methyltransferase domain 305 420 IPR041698 -
Stsc90807g00005 638 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 55 620 IPR025799 GO:0016274|GO:0018216
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90807g00005 Stsc-Chr90807 40432 44698 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90807g00005 12 637 C2H2 Transcription Factor Family AT3G12270 53.858 0.0 662
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90807g00005 K11436 - gmx:100778113 877.085