Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90806g00004 ATGAATGATCTAGAAATAGATTATTCAAAATATGAGTCTAGTGTGAATAGAAAGGGCAAACATGTACATGATCAGAGAGATGAGAAACCAGCAGTTGGAAAAGGATTGGCATTGTTTTCTCCTCAGCCTCATAATAAGAAACTGAGAGGTGAGAGCTCCACTGGAAGGAGAAGAAGAACATCATCTTTGAATTGGCCAAAGCAACTTAAAGCTCAGGAAGTTGCTCAGAAATTCATCTCATGTAACCCTTTCTTCACGGTGTTCATAACGCCTAATTGCCTCAAAGAATACCGACTGAATGTACCGACTATGAAAGATTATATTGAAGACAAGAGGGAGGATGTGATGCTTAAGGTGGGAAAAAGACAATGGCAAGTAAAGTTGCTCCCTTGCCACAATGCATCGCGCCGCTTCTCGGGCGGTTGGTCTTTGTTTGCCAATGAGAACGGATTGCAAGCTGAAGATGTTTGTGTCTTTGAACTCATTAACATGGAGGATTTAGTTTTTAAGGTTCATGTTTTCAAGTAG 528 0.4053 MNDLEIDYSKYESSVNRKGKHVHDQRDEKPAVGKGLALFSPQPHNKKLRGESSTGRRRRTSSLNWPKQLKAQEVAQKFISCNPFFTVFITPNCLKEYRLNVPTMKDYIEDKREDVMLKVGKRQWQVKLLPCHNASRRFSGGWSLFANENGLQAEDVCVFELINMEDLVFKVHVFK 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90806g00004 175 Gene3D - 66 175 IPR015300 -
Stsc90806g00004 175 MobiDBLite consensus disorder prediction 14 31 - -
Stsc90806g00004 175 ProSiteProfiles B3 DNA-binding domain profile. 84 175 IPR003340 GO:0003677
Stsc90806g00004 175 SMART B3_2 84 175 IPR003340 GO:0003677
Stsc90806g00004 175 SUPERFAMILY DNA-binding pseudobarrel domain 81 175 IPR015300 -
Stsc90806g00004 175 MobiDBLite consensus disorder prediction 14 64 - -
Stsc90806g00004 175 CDD B3_DNA 84 175 IPR003340 GO:0003677
Stsc90806g00004 175 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 58 174 IPR044837 -
Stsc90806g00004 175 Pfam B3 DNA binding domain 84 174 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90806g00004 Stsc-Chr90806 48714 50156 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90806g00004 43 175 B3 DNA Binding Superfamily AT3G18990 33.094 2.35e-14 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc90806g00004 B3 1.9e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90806g00004 - - vvo:131658695 157.532