Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90806g00002 ATGTCTTCTCATCAGCATCATCAATGCGGGAACAATACTATGTTGCCTTTCCGTTTCTTCAAGGCTATACTCAAAACTAATCTTCAAAGGATTATTTTCACACAGAAAATACCCAATAAGTTTTCAAGGAGATATGGAAGTGCTCTCTCAAATCCAGTGTTTCTAAAGCCTCCAGATGGCAATCTATGGAAAGTGCATTGGACAAAAAAGAATAGTAATGAAGTTTGGTTTGTAAAAGGATGGAAGGAATTTACCAAAAACTACTCTCTTAATGAAGGACATTTGGTTCTGTTTAAATATGAAGGAACTTGTCAGTTTGATGTAATCATACTTGAGATGAATGATCTAGAAATAGATTATTCAAAATATGAGACTACTGTGAATAGAAAGGGCAAACAAGATCAGAGAGATAAGAAACCAGTTGTAAAAATAAATAATAATTCTGGAAAAAGGTTGGCATTGCTTTCTCCTCAGCCTTGTAAGAAAGTGAGAGGTGAGAGCTCTACTCAAAGAAAAAGAACATCATCTTTGAATTGGCCAAAGCAACCTGAAGCTCAGGAAGTAGCTAAGAAATTCATCTCATGTAACCCTTTCTTCACGCTGTTCATAACGCCTAATTGCCTCAAAGAATACCAATTGAATGTACCGGTGACTTTGAAAGGTTACATTGAGAACGAGACAAAGGATGTGACCCTTAAGGTTGGGAAAAGAGAATGGCAAGTAAAGTTGCTTCCCCGTCGCACCACGCCCCGCCGCCTCTCGGGTGGTTGGTCCTTGTTTACGCGCGAGAGCGGATTGCAAGCTGAAGATGTTTGTGTCTTTGAACTGATTAACATGGAAGATTTAGTTTTTAAGCTTCCTTTTCATATCCCAATGTTTAATTCAGGGTTCTTCTCATTCATTTCCACTTCTGTTCCATTTCGTCCGCTGGCTTCCGGCGAAGAGCTGTGTGGCTTGGTGGTTGGTGTTCTTGTTGAGTTGTTGCTGCGGCCAAATAGGTTCACGCTGCGGTAG 1014 0.4004 MSSHQHHQCGNNTMLPFRFFKAILKTNLQRIIFTQKIPNKFSRRYGSALSNPVFLKPPDGNLWKVHWTKKNSNEVWFVKGWKEFTKNYSLNEGHLVLFKYEGTCQFDVIILEMNDLEIDYSKYETTVNRKGKQDQRDKKPVVKINNNSGKRLALLSPQPCKKVRGESSTQRKRTSSLNWPKQPEAQEVAKKFISCNPFFTLFITPNCLKEYQLNVPVTLKGYIENETKDVTLKVGKREWQVKLLPRRTTPRRLSGGWSLFTRESGLQAEDVCVFELINMEDLVFKLPFHIPMFNSGFFSFISTSVPFRPLASGEELCGLVVGVLVELLLRPNRFTLR 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90806g00002 337 Gene3D - 180 290 IPR015300 -
Stsc90806g00002 337 SMART B3_2 198 290 IPR003340 GO:0003677
Stsc90806g00002 337 SMART B3_2 19 114 IPR003340 GO:0003677
Stsc90806g00002 337 SUPERFAMILY DNA-binding pseudobarrel domain 18 113 IPR015300 -
Stsc90806g00002 337 CDD B3_DNA 17 111 IPR003340 GO:0003677
Stsc90806g00002 337 Pfam B3 DNA binding domain 36 107 IPR003340 GO:0003677
Stsc90806g00002 337 Pfam B3 DNA binding domain 198 284 IPR003340 GO:0003677
Stsc90806g00002 337 ProSiteProfiles B3 DNA-binding domain profile. 198 296 IPR003340 GO:0003677
Stsc90806g00002 337 PANTHER B3 DOMAIN-CONTAINING 17 280 - -
Stsc90806g00002 337 SUPERFAMILY DNA-binding pseudobarrel domain 195 278 IPR015300 -
Stsc90806g00002 337 Gene3D - 14 115 IPR015300 -
Stsc90806g00002 337 CDD B3_DNA 197 290 IPR003340 GO:0003677
Stsc90806g00002 337 ProSiteProfiles B3 DNA-binding domain profile. 20 114 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90806g00002 Stsc-Chr90806 30391 32991 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90806g00002 166 286 B3 DNA Binding Superfamily AT3G18990 31.200 5.62e-10 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc90806g00002 B3 8.4e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90806g00002 - - lang:109346569 259.61