Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90804g00010 ATGGATGAACAACATAGAAAGATCTATGTTTTTGTTCATGATGTGGTGATTTTGTTGGTGATGGTGGTGCTGGTGGGATCAAGTTGTGTAAAAGGAGGAGGAGAAGAAGAAGATAGGATCTTGGAACTTCCTGGTCAACCAAAGGTGTCTTTTCAGCAGTTTTCTGGCTATGTTACTGTCAACAAGGTTGCTGGTAGAGCACTTTTCTACTGGCTCACTGAAGCTTCTCAAAACTCACTCAGAAAACCCCTTGTCATTTGGCTCAATGGAGGTCCCGGTTGTTCATCAGTAGCATATGGAGCATCTGAAGAGATTGGCCCTTTCAGAGTAAATAGGACTGCTTCAGGGTTATACATTAACAAGTTTTCATGGAACACAGTGGCCAACCTCCTATTCCTGGAAACTCCGGCCGGCGTCGGGTTCTCGTACACCAATCGCTCCTCCGACCTGCATGACACCGGAGACCACCGCACCGCCCAAGACTCTCTGGAATTTGTAGTCCAGTGGCTGGAAAGGTTCCCTCGCTATAAGAATCGGGAGCTTTACATCACTGGAGAGAGCTATGCTGGCCATTATGTCCCTCAATTAGCTAAAGAAATTATGACTTATAACACCAACAACAAGAAGAACCCCATCAATCTCAAAGGAATAATGGTTGGAAATGCAGTAACAGACAACTATTATGACAACTTAGGAACAGTGACATATTGGTGGAGCCATGCAATGATCTCTGACCAGACTTACAGGCAACTCATTAGCACTTGTGACTTCCACAGGCAGAAGGAATCTGATGAGTGTGAGTCTCTGTATAGCTATGCCATGGATCAAGAATTCGGAAACATTGATCAATACAACATCTATGCACCTCCCTGCAACAACTCCGATGGCAGCGCCGCCACCTCCCGCCGCTCTATGCGCCTACCCCATCGCCCCCGTCATCCGGCAGTTAGGCAATTGTCTGGGTATGATCCATGTACTGAAAAGTATGCAGAGATATACTACAATAGGCCAGATGTTCAGAAAGCACTTCATGCTAACACTACTGGAATTCCTTATAAGTGGACTGCTTGCAGTGAGGTTTTGAATCGGAACTGGAATGATACAGATGTATCGGTTCTACCAATTTATAGAGAGTTGATGGCTAATGGAATAAGAGTTTGGGTGTTCAGTGGAGACGTAGATTCAGTGGTGCCGGTTACAGCAACTAGATATGCACTTGCACAGCTTAAGGTGGCAACTAAAATACCATGGTATCCTTGGTATGTCAAAAATCAGGTTGGAGGGTGGACTGAAGTATATGAAGGCCTAACATTTGCGACAGTTAGAGGAGCAGGTCATGAAGTTCCATTATTCAAGCCAAGAGCAGCCCTTCAGTTATTCAAATCATTCCTTTCTGGAAAGCCTCTCCCTAAGTCCTAA 1419 0.4517 MDEQHRKIYVFVHDVVILLVMVVLVGSSCVKGGGEEEDRILELPGQPKVSFQQFSGYVTVNKVAGRALFYWLTEASQNSLRKPLVIWLNGGPGCSSVAYGASEEIGPFRVNRTASGLYINKFSWNTVANLLFLETPAGVGFSYTNRSSDLHDTGDHRTAQDSLEFVVQWLERFPRYKNRELYITGESYAGHYVPQLAKEIMTYNTNNKKNPINLKGIMVGNAVTDNYYDNLGTVTYWWSHAMISDQTYRQLISTCDFHRQKESDECESLYSYAMDQEFGNIDQYNIYAPPCNNSDGSAATSRRSMRLPHRPRHPAVRQLSGYDPCTEKYAEIYYNRPDVQKALHANTTGIPYKWTACSEVLNRNWNDTDVSVLPIYRELMANGIRVWVFSGDVDSVVPVTATRYALAQLKVATKIPWYPWYVKNQVGGWTEVYEGLTFATVRGAGHEVPLFKPRAALQLFKSFLSGKPLPKS 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90804g00010 472 ProSitePatterns Serine carboxypeptidases, serine active site. 183 190 IPR018202 GO:0004185
Stsc90804g00010 472 ProSitePatterns Serine carboxypeptidases, histidine active site. 436 453 IPR033124 GO:0004185
Stsc90804g00010 472 Gene3D alpha/beta hydrolase 34 293 IPR029058 -
Stsc90804g00010 472 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 29 - -
Stsc90804g00010 472 SUPERFAMILY alpha/beta-Hydrolases 36 470 IPR029058 -
Stsc90804g00010 472 Pfam Serine carboxypeptidase 45 466 IPR001563 GO:0004185|GO:0006508
Stsc90804g00010 472 Gene3D - 372 466 - -
Stsc90804g00010 472 Gene3D - 325 362 - -
Stsc90804g00010 472 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 41 453 IPR001563 GO:0004185|GO:0006508
Stsc90804g00010 472 FunFam Carboxypeptidase 34 293 - -
Stsc90804g00010 472 PRINTS Carboxypeptidase C serine protease (S10) family signature 169 194 IPR001563 GO:0004185|GO:0006508
Stsc90804g00010 472 PRINTS Carboxypeptidase C serine protease (S10) family signature 120 132 IPR001563 GO:0004185|GO:0006508
Stsc90804g00010 472 PRINTS Carboxypeptidase C serine protease (S10) family signature 436 449 IPR001563 GO:0004185|GO:0006508
Stsc90804g00010 472 PRINTS Carboxypeptidase C serine protease (S10) family signature 133 143 IPR001563 GO:0004185|GO:0006508
Stsc90804g00010 472 FunFam Carboxypeptidase 372 466 - -
Stsc90804g00010 472 FunFam Carboxypeptidase 321 469 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90804g00010 Stsc-Chr90804 43053 49712 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90804g00010 330 469 Calmodulin-binding Proteins AT2G22960 32.624 2.30e-17 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90804g00010 K16297 - gmx:100807680 839.721