Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90804g00002 ATGGCGTTCTTCAATAGAATGGGAAGCCTACTGAAGCAATCTGCTGTCAGGCATATCAATCAAGAGTTGTCTGGATTGAATCCTTCGATTTTCCAGGCTATTCGATCCATGTCATCTTCAAAGCTTTTCATTGGAGGCATTTCATATAGCACAGATGAGATGAGTCTGCGGGAGGCTTTTGCACGTTATGGAGAAGTAGTTGATGCAAGGGTTATTATGGACCGTGAAACTGGAAGGTCCAGAGGTTTTGGCTTCATCACTTTTGCAACAACTGAGGATGCATCTTCTGCCATTCAAGCCATGGATGGCCAGGATCTTCATGGTCGGAGGATACGCGTGAACTATGCTACAGAAAGATCACGTCCAGGATTTGGTGGCGGCGGAGGCTATGGCGGCGCTGGCGGATATGGGGGTGGTGGCTATGGAGGAGGTGGTGGCTATGGCGGCGGCGGCGGCTATGGTGGCGGTAATTACGGTGGTAATGCCAATAGTGGCGGAGGTTATGGAGGCGGTGGATATGGTGCACCAGCCAGCTATGGTGGTGGCAATGCTGAAACTAGTTTCACAGATAGCGGTGCTAGTAATTACCAATTCAATGATAATTCTGGTGGAGATCTTCCCTCTGGTGGTGGCAATACGGGTATGGGAGATGATCTTGAGTTTGATGAACCTAAGGACAGAACAGATGGTGAGTTTCAAGACGACAATCTGAGAGAAAACAACGACGAACCCAATGATATTGCACAGAACCGCGGCTGA 759 0.4901 MAFFNRMGSLLKQSAVRHINQELSGLNPSIFQAIRSMSSSKLFIGGISYSTDEMSLREAFARYGEVVDARVIMDRETGRSRGFGFITFATTEDASSAIQAMDGQDLHGRRIRVNYATERSRPGFGGGGGYGGAGGYGGGGYGGGGGYGGGGGYGGGNYGGNANSGGGYGGGGYGAPASYGGGNAETSFTDSGASNYQFNDNSGGDLPSGGGNTGMGDDLEFDEPKDRTDGEFQDDNLRENNDEPNDIAQNRG 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90804g00002 252 MobiDBLite consensus disorder prediction 191 208 - -
Stsc90804g00002 252 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 112 IPR000504 GO:0003723
Stsc90804g00002 252 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 36 193 - -
Stsc90804g00002 252 SUPERFAMILY RNA-binding domain, RBD 28 150 IPR035979 GO:0003676
Stsc90804g00002 252 MobiDBLite consensus disorder prediction 191 252 - -
Stsc90804g00002 252 PRINTS Eggshell protein signature 36 52 - -
Stsc90804g00002 252 PRINTS Eggshell protein signature 131 146 - -
Stsc90804g00002 252 PRINTS Eggshell protein signature 209 227 - -
Stsc90804g00002 252 PRINTS Eggshell protein signature 161 171 - -
Stsc90804g00002 252 SMART rrm1_1 41 114 IPR000504 GO:0003723
Stsc90804g00002 252 Gene3D - 12 137 IPR012677 -
Stsc90804g00002 252 CDD RRM2_NsCP33_like 41 116 - -
Stsc90804g00002 252 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 118 IPR000504 GO:0003723
Stsc90804g00002 252 MobiDBLite consensus disorder prediction 218 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90804g00002 Stsc-Chr90804 4913 7838 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90804g00002 40 119 Eukaryotic Initiation Factors Gene Family AT1G49760 33.750 1.97e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90804g00002 K12741 - gmx:100807155 261.922