Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90801g00012 ATGGCGGCGTGCTCCGGCGGCCACAAGATAACTGCGAGGCAGCGATGGACGCCGACGCCGATTCAGCTTCAGATTCTGGAGCGTATATTTGACGAAGGAAATGGCACTCCAAACAAACAGAAGATCAAGGAGATAACCGTTGAGCTCGGTCAACATGGCCAGATTTCAGAGACTAATGTCTATAATTGGTTCCAGAATAGAAGGGCTCGTTCCAAGCGCAAGCAACTCCTTCCTTCTCAGAATAATCTAGAAGCAGAAGCAGACGCAGAAGTCGAGTCTCCGAAAGAGAAAAAAATGCCAGAAATTCAAGAAACAATTCAACTTCATTCCTATGAGAACTTGTCCCACACTACTAGTCCTGACCTAGGATTTGAGCAACTCATGAGTAAAATAGAAGCTGCAAGCTGCTATGGTTCTTATTTTCTTTAG 429 0.4545 MAACSGGHKITARQRWTPTPIQLQILERIFDEGNGTPNKQKIKEITVELGQHGQISETNVYNWFQNRRARSKRKQLLPSQNNLEAEADAEVESPKEKKMPEIQETIQLHSYENLSHTTSPDLGFEQLMSKIEAASCYGSYFL 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90801g00012 142 ProSiteProfiles 'Homeobox' domain profile. 9 74 IPR001356 GO:0003677
Stsc90801g00012 142 SMART HOX_1 11 78 IPR001356 GO:0003677
Stsc90801g00012 142 PANTHER WUSCHEL-RELATED HOMEOBOX 13 4 124 IPR044559 GO:0003700
Stsc90801g00012 142 Pfam Homeodomain 13 73 IPR001356 GO:0003677
Stsc90801g00012 142 CDD homeodomain 13 75 IPR001356 GO:0003677
Stsc90801g00012 142 Gene3D - 14 77 - -
Stsc90801g00012 142 SUPERFAMILY Homeodomain-like 12 75 IPR009057 -
Stsc90801g00012 142 MobiDBLite consensus disorder prediction 72 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90801g00012 Stsc-Chr90801 70641 71829 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90801g00012 1 123 Wox Gene Family AT1G20700 53.659 8.92e-40 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Stsc90801g00012 Homeodomain 1.9e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90801g00012 - - pvu:PHAVU_009G012200g 206.453