Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90801g00011 ATGGAGGCAGAGCAAGACACAAGAGCGGCTAACAATAATAATGGAATCGGAAGCTTATACGTCAAAGTCATGACAGATGAACAATTGGAAATGCTCCGGCAACAGATTTCAGTCTACGCCACCATCTGCGACCGCCTCGTTGAGATGCACAAGTCAATCACCACTCAGCAAGACCTCGCAGGAATGAGGTTGGGGAATTTATACTGTGATCCACTCATGGCGGCGTGCTCCGGCGGCCACAAGATAACTGCGAGGCAGCGATGGACGCCGACGCCGATTCAGCTTCAGATTCTGGAGCGTATATTTGACGAAGGAAATGGCACTCCAAACAAACAGAAGATCAAGGAGATAACCGTTGAGCTCGGTCAACATGGCCAGATTTCAGAGACTAATGTCTATAATTGGTTCCAGAATAGAAGGGCTCGTTCCAAGCGCAAGCAACTCCTTCCTTCTCAGAATAATCTAGAAGCAGAAGCAGACGCAGAAGTCGAGTCTCCGAAAGAGAAAAAAATGCCAGAAATTCAAGAAACAATTCAACTTCATTCCTATGAGAACTTGTCCCACACTACTAGTCCTGACCTAGGATTTGAGCAACTCATGAGTAAAATAGAAGCTGCAAGCTGCTATGGTTCTTATTTTCTTTAG 645 0.4605 MEAEQDTRAANNNNGIGSLYVKVMTDEQLEMLRQQISVYATICDRLVEMHKSITTQQDLAGMRLGNLYCDPLMAACSGGHKITARQRWTPTPIQLQILERIFDEGNGTPNKQKIKEITVELGQHGQISETNVYNWFQNRRARSKRKQLLPSQNNLEAEADAEVESPKEKKMPEIQETIQLHSYENLSHTTSPDLGFEQLMSKIEAASCYGSYFL 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90801g00011 214 Pfam Homeodomain 85 145 IPR001356 GO:0003677
Stsc90801g00011 214 SMART HOX_1 83 150 IPR001356 GO:0003677
Stsc90801g00011 214 MobiDBLite consensus disorder prediction 148 170 - -
Stsc90801g00011 214 CDD homeodomain 85 147 IPR001356 GO:0003677
Stsc90801g00011 214 PANTHER WUSCHEL-RELATED HOMEOBOX 13 7 195 IPR044559 GO:0003700
Stsc90801g00011 214 Gene3D - 86 149 - -
Stsc90801g00011 214 ProSiteProfiles 'Homeobox' domain profile. 81 146 IPR001356 GO:0003677
Stsc90801g00011 214 SUPERFAMILY Homeodomain-like 84 147 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90801g00011 Stsc-Chr90801 70641 72004 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90801g00011 19 147 Wox Gene Family AT4G35550 75.969 2.37e-71 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Stsc90801g00011 Homeodomain 4.5e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90801g00011 - - pvu:PHAVU_009G012200g 310.071