Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Stsc90801g00006 | ATGCCTATGGGTTGCCTTGAAGATCATCTCTTTGATCCTCCCCAAGACAAAGAACCACTGAGTTGGAGTACACGGATGAAGATTGCTGTTGGGGCTGCCCGAGGCCTTGAGTATCTCCATTGTAGAGCTGATCCTCCAGTTATTTATCGAGACTTGAAGTCTGCAAATATCCTATTAGACAATGAATTCAACCCCAAACTGTCAGATTTTGGACTTGCTAAACTTGGACCTGTCGGAGACAATACCCATGTTTCAACAAGGGTGATGGGAACATATGGCTACTGTGCACCAGAATATGCCATGAGTGGAAAATTAACTCTTAAATCTGATATATACAGCTTTGGTGTGGTTTTGTTGGAGTTGATCACTGGGCGTAGGGCAATAGATAGTAGCAAAAGACCAGGGGAGCAAAACTTAATTTCATGGGCTCGCCCGTGTTTCAGCGACCGGAGAAAGTTCATACAATTGGTTGATCCCCTTTTGCAAGGAAACTTCCCATTGCGCTGTTTACATCAGGCAATTGCCATTACTGCAATGTGTCTACAGGAGCAACCGAAAGTCCGGCCGCTAATCGGGGATATTGTTGTTGCATTGGAGTACCTAGCCTCTCAGAGCATCCCTGAAGTGCAAAGGCAGAACCCACCATCTCAACATTCAGAAATTGACAGAAATTAA | 675 | 0.4489 | MPMGCLEDHLFDPPQDKEPLSWSTRMKIAVGAARGLEYLHCRADPPVIYRDLKSANILLDNEFNPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMSGKLTLKSDIYSFGVVLLELITGRRAIDSSKRPGEQNLISWARPCFSDRRKFIQLVDPLLQGNFPLRCLHQAIAITAMCLQEQPKVRPLIGDIVVALEYLASQSIPEVQRQNPPSQHSEIDRN | 224 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Stsc90801g00006 | 224 | PIRSF | ILK | 1 | 212 | - | - | |
| Stsc90801g00006 | 224 | PANTHER | OS07G0668900 PROTEIN | 1 | 207 | - | - | |
| Stsc90801g00006 | 224 | Pfam | Protein kinase domain | 8 | 193 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Stsc90801g00006 | 224 | FunFam | Serine/threonine-protein kinase PBS1 | 1 | 217 | - | - | |
| Stsc90801g00006 | 224 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 47 | 59 | IPR008271 | GO:0004672|GO:0006468 | |
| Stsc90801g00006 | 224 | SUPERFAMILY | Protein kinase-like (PK-like) | 1 | 199 | IPR011009 | - | |
| Stsc90801g00006 | 224 | SMART | serkin_6 | 1 | 201 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Stsc90801g00006 | 224 | ProSiteProfiles | Protein kinase domain profile. | 1 | 201 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Stsc90801g00006 | 224 | Gene3D | Transferase(Phosphotransferase) domain 1 | 1 | 220 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Stsc90801g00006 | Stsc-Chr90801 | 48703 | 50901 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Stsc90801g00006 | 1 | 222 | Glycoside Hydrolase | AT3G07070 | 60.793 | 9.63e-98 | 289 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| PK | RLK-Pelle_RLCK-VIIa-1 | Stsc90801g00006 | Pkinase | 1.5e-26 | CL0016 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Stsc90801g00006 | - | - | gmx:100796595 | 383.259 |