Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90801g00005 ATGGGAAACTGTTTCCGGAAGCCCAAGAGTAATAATAACAAGATTAATTCCAATAATAATAATCCACCTGCAGAAAGAATCAAGGAGAAGGGAGTGATGATGAAGAAGGAGACCGCGGTGCGAAATCTAAGAATGTTCACGTTGGATGAGCTGAAAAGTGCGACAAGGAATTTCAGACCGGATACTATGCTAGGTGAGGGTGGTTTTGGTCGTGTTTTTAAAGGGTGGGTTGACCAAAATACCCTCAAGCCTTCCAAAGTCGGAGTTGGAATCCCTGTTGCCGTTAAGAAGTCTAACCCCGACAGCCTCCAAGGCCTCCAAGAATGGCAGAGTGAGGTGAAATTCTTAGGGAAATTTTCTCATCCAAACCTGGTCAAACTAGTTGGGTATTGCTGGGAGGAGAATCAATTCTTGCTAGTATATGAATACATGCAAAAAGGCAGCTTGGAAAATCACCTCTTCAGAAGCCCAGAACCACTTGCATGGGATATAAGGATCNNNNNNNNNNAGCCATTGGAGCTGCAAGAGGGTTGGATTTCTTACATACATCTGAGAAATCAGTCATCTATAGAGACTTCAAGTCCTCTAACATTCTTCTTGACGGGGATTATAACGCAAAGCTGTCAGATTTTGGGTTGGCAAAGCTTGGCCCAGTCAATGGCAGATCCCATGTAA 675 0.4326 MGNCFRKPKSNNNKINSNNNNPPAERIKEKGVMMKKETAVRNLRMFTLDELKSATRNFRPDTMLGEGGFGRVFKGWVDQNTLKPSKVGVGIPVAVKKSNPDSLQGLQEWQSEVKFLGKFSHPNLVKLVGYCWEENQFLLVYEYMQKGSLENHLFRSPEPLAWDIRIXXXXPLELQEGWISYIHLRNQSSIETSSPLTFFLTGIITQSCQILGWQSLAQSMADPM 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90801g00005 224 ProSiteProfiles Protein kinase domain profile. 58 224 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90801g00005 224 Pfam Protein tyrosine and serine/threonine kinase 62 159 IPR001245 GO:0004672|GO:0006468
Stsc90801g00005 224 ProSitePatterns Protein kinases ATP-binding region signature. 64 97 IPR017441 GO:0005524
Stsc90801g00005 224 MobiDBLite consensus disorder prediction 1 24 - -
Stsc90801g00005 224 SUPERFAMILY Protein kinase-like (PK-like) 40 167 IPR011009 -
Stsc90801g00005 224 PANTHER OS01G0588500 PROTEIN-RELATED 22 166 - -
Stsc90801g00005 224 FunFam Serine/threonine-protein kinase BIK1 25 143 - -
Stsc90801g00005 224 Gene3D Phosphorylase Kinase; domain 1 28 143 - -
Stsc90801g00005 224 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90801g00005 Stsc-Chr90801 41635 44503 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90801g00005 44 166 Glycoside Hydrolase AT3G07070 46.032 2.12e-29 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Stsc90801g00005 PK_Tyr_Ser-Thr 3.9e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90801g00005 - - gmx:100784079 241.891