Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90801g00002 ATGGGAGATGGTGGAGTGTTATCATCAGCTACCATGATGGAAGCTCCTCCTTCTCCTCCTCCTCCACCACCACCACCACCACCACCATCAACTTCAGAGGTAGCAGCAACATCAATATCAATGGACTTTGATTATATCAATGAACTCTTTGTAGATGGTTGCTGGCTAGCAGCTTCTTCTTCTGCTGCTGCTGCTGCTGATGGATCTGCTGATTTCTACATGCAAAGTCCTTCTTTTTCAAACCCCATGCTTGACCCTTTCTCTTGGCCTTCCTTGGATACTGACCATATTGAATCACAAGAACATGAACAACAACAACAACAACCTCCTTTTAGCCATGACTTAGTACAGTATCATCATAATCAATATGAGAATCAGTCTGAGAATCATTATGTGGAGAACAATAATCCAAGTCCTAATCCTAATCCTGCTGAGTTTTTCAGAAGGTGGTGGATTGCACCAAGTTCTAATCCAGGACCTGGATCTTATGTAGTTGAGAAGCTATTGAAGGCACTCATGTGTATCAAAGATGTGAACAAAGACAAAGACATGCTTATACAAATATGGATTCCAGTTATGAACAGAGGAGGCACTCAGATTCTCACAACCAATGGGCTTCCATTCTCACTTGAATCAAGGTCTATGAACCTTGCAAAGTACAGAGAAATCTCGGTGGCGTTCGAGTTCTCGGCCGAGGAGGATTCGAAGGACTTGGTGCCTGGATTGCCAGGGAGAGTTTACAAGGAGAAGGTTCCTGAGTGGACTCCTGATGTTAGATTCTTCAGGAGCTATGAATATCCAAGAGTTGACCATGCTCAAGTCTATGATGTCAGAGGATCATTGGCACTTCCAATTTTTGAGCAAGGTAGCAAGAATTGCTTAGGTGTTATTGAAGTTGTCATGACTCAACAGCAAATCAATTATGGTCCTGAACTTGAAAGTGTTTGCAAAGCACTTGAGGCTGTTAATCTCAGAAGCTCAAAACTTCCAGCTATTCAGAATGTGAAGCATACATCATGTGAAAAGTCATATGAAACTGCATTGCCTGAGATTCAAGAAGTACTAAGATCTGCATGTGAAATTCACAAATTGCCATTGGCACAGACATGGATTCCATGCATCCAACAAGGCAAAGAAGGATGCCGGCACTCGGAAGACAATTATCTACACTGCATATCTCCAGTGGAGCATGCTTGCTATGTAGGTCACCCTTCCATCCAATCCTTTCATGAGGCTTGCTCTGAGCATCACTTGTTAAAAGGCCAAGGTGTTGCCGGTGGAGCATTCATGACGAATCAGCCCTGCTTCGCCACCGACATAACTTTGTTAAGCAAGACAGACTATCCACTTTCTCATCATGCAAGGATGTTTGGATTGCGAGCTGCGGTCGCCATACGGCTGCGAAGCATCTATAATAGTTCAGATGACTTTGTTCTTGAATTCTTCTTGCCTTTGGACTGCATTGACAATGATGAACAAAGGAAGATGCTCACTTCATTGTCCTTGATCATACAAAGGGTTTGCCATAGCTTGAGGGTTATATCAGATAAGGAATTAGAGGAGGAAACTAATTTATCAGTTGAACAAGTTATAGCTCATGAAGATAGTGGAACATTTGCTAGTGCTGCAGTGTGGCCAGAACCATTGCAGAATCAAATTGTTGCTTCATTGGGTACTGAAGAAAAATCAAGTGAAACAATGGGGACAAGTTTGCAGCAACAGCAAGAGAGTTCTGTTTTGAAAGGGAACCTTGACTCTAATGGCGTGTGTTCTACTCATAATGATGGAAACTTGTCAAGTAAAACCGGAGAAAAGAAGAAGACCAAAGCAGAGAAAACTATCACTCTGCAAGTTCTTCGCCAACATTTCGCCGGAAGCCTAAAAGATGCAGCAAAGAACATTGGTGTTTGTACTACAACATTGAAAAGGATTTGCCGGCAACATGGGATCAAACGTTGGCCGTCAAGGAAGATCAAGAAGGTTGGTCACTCCTTGCAGAAGCTTCAACTTGTGATTGACTCAGTCCAAGGTGCTTCTGGTGCATTTCAAATAGATTCTTTCTATTCAAAGTTCCCAGACCTAGCTGCTTCTCCAAATCTATCAGGAACAAGCTTGTTCTCAAATCTCAAGCAAAGTGATAATAATAATCCAAACTCACTAAGCACACAGCCAGATCCTGGTTCGCTGAGCCCGGAAGGCACGTCGAAATCCCCCTCCTCTTCTTGCAGCCAGAGCTCAATTTCTAGCCATCCATGTTCCAGCCTGGCTGAGCAACAGAATCATCATCACACAAGTAATAATAATAATAATAATAATAATAATGTTGATAGTAGCAAAGATCAAATGGTGTTATTGGTTGGAGAGAATTCTAAGGTTGATGGTTTGTTGAAGAGGATAAGAAGTGAAGCAGAATTGATGAAAAGCTTGAATGAAGAAGATAGAGCAAAAGTCATGCCAAGATCACAAAGTCAAGAAACACTACTTGGTCAACAACACAACCTTAAAAATGGGGACCATAGATCATTGTCAAGAACCAAAAGCAAAGGGACTCAAAAGGAAGATGCTCACAGAGTGAAAGTGACATATGGAGATGAGAAAGCAAGGTTCAAGATGCCAAAGAGTTGGGGGTATGAAGATCTTGTGCAAGAAGTTAGTAGGAGATTCTGCATAAGTGACATGAACAAATTTGATGTGAAATATTTAGATGATGATTATGAATGGGTGCTACTAACCTGTGATGATGATTTAGAAGAATGCATTGAAGTTTGTCAATCATCTGAGAGCACCACCATCAAGCTTTGCCTTCAACTCTCTAATAATACTAATCATTGTATGAGAAACCCTTTAGAATTTAGATAG 2859 0.4155 MGDGGVLSSATMMEAPPSPPPPPPPPPPPSTSEVAATSISMDFDYINELFVDGCWLAASSSAAAAADGSADFYMQSPSFSNPMLDPFSWPSLDTDHIESQEHEQQQQQPPFSHDLVQYHHNQYENQSENHYVENNNPSPNPNPAEFFRRWWIAPSSNPGPGSYVVEKLLKALMCIKDVNKDKDMLIQIWIPVMNRGGTQILTTNGLPFSLESRSMNLAKYREISVAFEFSAEEDSKDLVPGLPGRVYKEKVPEWTPDVRFFRSYEYPRVDHAQVYDVRGSLALPIFEQGSKNCLGVIEVVMTQQQINYGPELESVCKALEAVNLRSSKLPAIQNVKHTSCEKSYETALPEIQEVLRSACEIHKLPLAQTWIPCIQQGKEGCRHSEDNYLHCISPVEHACYVGHPSIQSFHEACSEHHLLKGQGVAGGAFMTNQPCFATDITLLSKTDYPLSHHARMFGLRAAVAIRLRSIYNSSDDFVLEFFLPLDCIDNDEQRKMLTSLSLIIQRVCHSLRVISDKELEEETNLSVEQVIAHEDSGTFASAAVWPEPLQNQIVASLGTEEKSSETMGTSLQQQQESSVLKGNLDSNGVCSTHNDGNLSSKTGEKKKTKAEKTITLQVLRQHFAGSLKDAAKNIGVCTTTLKRICRQHGIKRWPSRKIKKVGHSLQKLQLVIDSVQGASGAFQIDSFYSKFPDLAASPNLSGTSLFSNLKQSDNNNPNSLSTQPDPGSLSPEGTSKSPSSSCSQSSISSHPCSSLAEQQNHHHTSNNNNNNNNNVDSSKDQMVLLVGENSKVDGLLKRIRSEAELMKSLNEEDRAKVMPRSQSQETLLGQQHNLKNGDHRSLSRTKSKGTQKEDAHRVKVTYGDEKARFKMPKSWGYEDLVQEVSRRFCISDMNKFDVKYLDDDYEWVLLTCDDDLEECIEVCQSSESTTIKLCLQLSNNTNHCMRNPLEFR 952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90801g00002 952 MobiDBLite consensus disorder prediction 558 610 - -
Stsc90801g00002 952 ProSiteProfiles PB1 domain profile. 855 938 IPR000270 GO:0005515
Stsc90801g00002 952 MobiDBLite consensus disorder prediction 706 777 - -
Stsc90801g00002 952 MobiDBLite consensus disorder prediction 837 856 - -
Stsc90801g00002 952 CDD PB1_NLP 856 936 IPR034891 -
Stsc90801g00002 952 PANTHER PROTEIN NLP8 95 938 IPR045012 GO:0003700
Stsc90801g00002 952 MobiDBLite consensus disorder prediction 558 598 - -
Stsc90801g00002 952 Coils Coil 792 812 - -
Stsc90801g00002 952 MobiDBLite consensus disorder prediction 90 109 - -
Stsc90801g00002 952 MobiDBLite consensus disorder prediction 810 856 - -
Stsc90801g00002 952 ProSiteProfiles RWP-RK domain profile. 600 681 IPR003035 -
Stsc90801g00002 952 SUPERFAMILY CAD & PB1 domains 846 939 - -
Stsc90801g00002 952 Gene3D - 851 935 - -
Stsc90801g00002 952 MobiDBLite consensus disorder prediction 1 33 - -
Stsc90801g00002 952 SUPERFAMILY Formin homology 2 domain (FH2 domain) 19 29 - -
Stsc90801g00002 952 MobiDBLite consensus disorder prediction 14 32 - -
Stsc90801g00002 952 SMART PB1_new 855 938 IPR000270 GO:0005515
Stsc90801g00002 952 MobiDBLite consensus disorder prediction 820 836 - -
Stsc90801g00002 952 Pfam RWP-RK domain 613 661 IPR003035 -
Stsc90801g00002 952 Pfam PB1 domain 856 936 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90801g00002 Stsc-Chr90801 16651 19935 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90801g00002 40 935 NLP Transcription Factor Family AT4G35270 41.304 0.0 655
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Stsc90801g00002 PB1 1.1e-18 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90801g00002 - - ahf:112705709 1526.53