Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90800g00003 ATGGCAAAGTGTCACCGGAACAACGTCGGATCCGTCGTAATCGACCACCGTCACCCTACCAAGAATGCCGCCACAGCCGGCCACTTCCGCCGCTGGAACTCCATCTCCGCCTCCTCTATCCGTCGCATCGTTCTCGACGCCGTCAGCTGCGGCACCTCGCGCTACGTTTACCACCAGCGCGACGACGACGACGACGAAGGATCCAGCTCCGCCGAAACTTCGACAGCGAGTCTGTCCTCCGGTAGCCGGAGGGAGAACCGGCCAGAGCAGAAAACAGAGAAGCTCGCGGATCTGCTGAACTTAACGGAGTGCGAGAATGAGGCGGAGGCGAAGAAGAAGGAAGAGGCGCTGGTGGAGCTGAAGCGAGTCGTGAAGGACCTTCAGCAGGGAGAGGACTTGGCGAAGCGCCGCATGGCGGCGGCGACGTTGAGGTCGCTTGCGAAAGAACAATCGGAAGTTAGAGGAACGCTCGCTATGCTTGGAGCCATTCCTCCGCTCGTCGGAATGCTCGATTCCGAAGACGTTCATTCTCAGATTGCTTCGCTCTATGCGTTGCTCAATCTCGGGATCGGCAACGATGCAAACAAAGCAGCTATCGTTAAAGTCGGTGCTGTTCACAAGATGCTGAAGTTAATTGAATCACCGGATGCTACTGATTCATCAGTTTCTGAAGCAATTGTTGCTAATTTCCTTGGATTGAGTGCTTTGGATTCTAATAAACCAATAATTGGATCCTCTGGTGCAATTCCATTCCTAGTTAGAACCCTTCAAGATTTGGATTACAAATGTAGCCAACAAGCCAAGCAAGATGCTCTTCGAGCTCTGTACAACCTATCGATCTTTCCAACAAACAATTCGTTCATTTTGGAAACTGAGTTGGTCCCCTTTTTGGTTAGTTCAATAGGAGACATGGAAGTGAGTGAGAGAGTGCTTTCAATTCTAAGCAATCTTGTGCCAACCCCAGAGGGTAGAAAAGCTATCAGTGCTGTAAAGGACGCGATATTTATTCTGGTGGATGTGTTGAATTGGACGGATTCACCGGGGTGCCAAGAGAAGGTGTCATACATTTTGATGATTATGGCACACAAATCCTACAGCCACAGGCAGGTCATGATTGAAGCTGGGATCGGATCATCTCTGCTTGAATTGACCCTCCTTGGTTCTACATTGGCACAGAAAAGGGCCTCAAGAATCTTGGAATGTTTGAGGACAGACAAGGGGAAACAAGTTTCTAGAAGCTGTGGCCGAGGAAGCTTGGGGGCCGATATCTCTGCGCCTATTTGCAGCGCTTCGTCGTCGTCTTTTGTGAAGGCTTCCGGTGGAGGAGGTAAAAGCTATTTGGAGGAAGAGGAGGAGGGGGAAGATATGATGAGTGAGGAGAAGAAAGCAGTGAAGCAATTAGTTCAGCAGAGTTTGCAAAACAACATGAGGAAAATTGTCAAGAGGGCCAACTTGCGTCAAGATTTTGTTCNNNNNNNNNNTCTCACTTCAAGTTCAACTTCCAAGAGCCTGCCGTTTTGA 1521 0.4964 MAKCHRNNVGSVVIDHRHPTKNAATAGHFRRWNSISASSIRRIVLDAVSCGTSRYVYHQRDDDDDEGSSSAETSTASLSSGSRRENRPEQKTEKLADLLNLTECENEAEAKKKEEALVELKRVVKDLQQGEDLAKRRMAAATLRSLAKEQSEVRGTLAMLGAIPPLVGMLDSEDVHSQIASLYALLNLGIGNDANKAAIVKVGAVHKMLKLIESPDATDSSVSEAIVANFLGLSALDSNKPIIGSSGAIPFLVRTLQDLDYKCSQQAKQDALRALYNLSIFPTNNSFILETELVPFLVSSIGDMEVSERVLSILSNLVPTPEGRKAISAVKDAIFILVDVLNWTDSPGCQEKVSYILMIMAHKSYSHRQVMIEAGIGSSLLELTLLGSTLAQKRASRILECLRTDKGKQVSRSCGRGSLGADISAPICSASSSSFVKASGGGGKSYLEEEEEGEDMMSEEKKAVKQLVQQSLQNNMRKIVKRANLRQDFVXXXXLTSSSTSKSLPF 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90800g00003 506 Coils Coil 110 130 - -
Stsc90800g00003 506 Gene3D - 48 264 IPR011989 -
Stsc90800g00003 506 Gene3D - 265 414 IPR011989 -
Stsc90800g00003 506 SUPERFAMILY ARM repeat 119 402 IPR016024 -
Stsc90800g00003 506 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 23 506 - -
Stsc90800g00003 506 SMART arm_5 192 235 IPR000225 GO:0005515
Stsc90800g00003 506 SMART arm_5 150 190 IPR000225 GO:0005515
Stsc90800g00003 506 SMART arm_5 236 280 IPR000225 GO:0005515
Stsc90800g00003 506 MobiDBLite consensus disorder prediction 58 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90800g00003 Stsc-Chr90800 40720 42847 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90800g00003 115 417 U-box Gene Family AT2G23140 31.908 3.20e-27 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90800g00003 - - qsa:O6P43_015754 579.711