LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc90799g00015	CTGAAGCAGTTCCGTAACGAGAGAGTCAAGAAGTGGCTTGTTGATCTCCAAGATGCTCTCTATTTGGCTGATGACTTGGTGGATGAACTCTGCACTAAAGCTGCCACTGCCACTCCAAGGGATCCAGGTAACTCTTATGACTGGTCTCGCACTGTTGATTCAATTATTGATGATGGTGGTGTCAATGTCATCCAAAAAATAGTTGGCAAACTAGAGTCTGTTGTAGGACGAAAAGGTAAACTTGGTCTGGAAAAGAGTGCCAAGTTGGACACATCATGGAGAATTCCATCCACATCTCTCGTTGTTAGTTCTGACATATTTGGTCGGGAGAAAGACAAAGAGAACATAATCAAATTCCTGTTAGATGATACCTGTGATGCTAAATCACCTGAGACTGTGACTGTGATCCCCATTGTGGGTATGGGTGGGATAGGAAAAACTACTTTGGCTCAACTTGTTTACAATGATGCCGAAGTCGTGGGAAAATTTGACACTAGAGCATGGGTGTGTGTTGCTGAAAATCCTGACCCTCTTAATGTTACAAGGACAATAATAGGGGCACTAGATTCTTCTCCCTGTAACATGGATCATTTTGATTCACTTCAGACTCATTTGAAAGAAAAGTTGTCTAGAAAGACATTTTTAGTTGTTTTAGATGATGTCTGGAATGATGAACAAGACATGTGGGATGAATTTTTAAAACCTTTTCGATATGGGAATAATGGGAGTAAGATTCTCCTAACAACCTGTAGTGAAAAGGTGGCTTCTGTGTTCGCAGCTAACAATCTACACTACCGACTAAGTTTATTGTTGGAGGAAGATTGTTGGTCAGTGTTTTTGAAGCATTCATCTATTTCTACTAATTCTAAAGAATATGTAACTCTAGAACCAGTTGGTAGAAAAATTGTTGAGAAGTGTAAGGGGTTACCTTTGGCTGTCAAGACACTTGGGGGATTACTGCGCAATAAATATAATGAAGGTGATTGGGAAAAAATACTTGAAAGTGAAATTTGGGAACTCTCAGAAGATAAAAGTGAGTTGATTCATTTGCGTTATTTGGACCTCTCTTGCACACTTATTGAGATTTTGCCTGAGTCAATATGCAAATTATACAATCTCCAAACTTTGAAGTTGAAGAGTTGTTATTCACTTAAGATTCTTCCCAACCATATGCACGATATTGTAACCCTGTGTCACCTTGATATTCAAGGTGCTTATGAACTGGAAGAGATGCAGAAGAAAATGAGCAAGTTAATGCATCTAAACTTCTTAAGTAATTATATCATTGGTGAGCAGGAAGATAATGGGATAAGAGAATTGGGAACAATGGACAATCTCCATGGTTCATTTTGCATTTCCAAGTTGGAGAACGTCAAGAATAGTGGCGAAGCTTTGGAGGCAAAGATGGGTAACAAGAAGCACATCAGCACTTTAAACTTGCTCTGGAGTTTCGATGGTGACAATGACATTGATGATACTCGAATTGAAAGGGATATACTTGACAACTTACGACCTCATGAAAACTTGAAAGAGTTGTCAATTGTAAGGTACCGGGGTGAAACATTCCCAGAATGGTTAGGCTTTTCTTGCTACTTAAGCATGACCAAATTGATGCTGGGGTTTTGTATGAATTGTTGTGAGCTTCCTTGGCTTGGCCAGTTACCCTCTTTACGGCATCTGTTGATTCGTCATCTTGATAGGTTGGAGAAAATTGATTTTGAGATTTACAAGAACAACAACGGATCATTTCAGCGGGAGAGACCCTTCAAATCTCTTGAAATTCTGGAATTTGAGGATATGCATCATTGGCGGGAGTGGCATTTTCCTAATGAGTTTGATGGTTTTCCTCGGCTAAGAATCCTTACAATAAAATTCTGTCCGTTGTTTAGTGGAGATCTGCCAGATCACCTTCCGGCTCTGGAGGTACTCAACATTGCTGGATGTGAAAAGCTTGCATGTTCGATGCGGAGGACTCCAAAGCTTCAACAGTTATATGTAGAGGGTCACAGCTTTACTTCATATGGTAGAGAACCGAACGAGGTAGCAATTAAACAAACCCAGCTGGTGAAGTCCGTATTGGAGTGGCTGCCCCACATCCAACCGCCACGTGTCGAACGTCTGTGTATTAGTATGTGTCAGACACCCATATCAATCTCAACAGATTATTTGCCCGCTTCATTACAATCTCTGCAAATCTCTGTTTGTCCAAAATTAATATTCTCAGAGCAACTGCAACACAAGTCACTAACGGAGATAAATTTACAGTTTTGTTATTCATTGAAGTTGCTTCCATTGGGGAGCTTTCCAAATCTCAAGAAACTCACAATCAGTTTATGCCAAAGCTTGGAATATGTTGTGGTGCCACAGGCTCTTTCAAGTCTCGGTTATTTAAGCATCTCAAACTGCCCCAGTTTAGTATCCTTGCCACTGCTAGGATTGGCTGCGCCCTACCTAGAGGAGCTGCATATATGCAATTGCCCAGAAATCGATCGTTTTGCTGAGGAGTGCCTCCCGCCGAGTTTGAAAACTCTTGAAGTCGACCGATGCCAGAAACTAGCAAGTTGGATAACATCAAATATTTTGCAGAGTCAAGGCCTTATCCATCTTGGTCTTGGTTCATGCTTTGATGTAAAGTCCTTCCCATCAGAGGGTTGCTTTCCTACTTCTCTTGAGTCTCTAAAATTCTGGAACTTTCCAAATCTGGAGACTCTTAACTGCAAGGGGCTTCACCATCTTACCTCCCTAAAAAATTTAGCAATTACTGACTGTGAAAAGCTTGAAAATGTCACAGATGAAAATTTGCTTGCCTCCATAGCAAATATCTACATAGGGGGTGAATGTCCTTTGAGGCGTAAGCTGGAAGAGATGGAACACCCACGAATTCATTTCGTTTGTTACGAACAAGGTAATCCTAAACTCAGTGCTCTCCAATTTCAATGCTAA	2943	0.4077	LKQFRNERVKKWLVDLQDALYLADDLVDELCTKAATATPRDPGNSYDWSRTVDSIIDDGGVNVIQKIVGKLESVVGRKGKLGLEKSAKLDTSWRIPSTSLVVSSDIFGREKDKENIIKFLLDDTCDAKSPETVTVIPIVGMGGIGKTTLAQLVYNDAEVVGKFDTRAWVCVAENPDPLNVTRTIIGALDSSPCNMDHFDSLQTHLKEKLSRKTFLVVLDDVWNDEQDMWDEFLKPFRYGNNGSKILLTTCSEKVASVFAANNLHYRLSLLLEEDCWSVFLKHSSISTNSKEYVTLEPVGRKIVEKCKGLPLAVKTLGGLLRNKYNEGDWEKILESEIWELSEDKSELIHLRYLDLSCTLIEILPESICKLYNLQTLKLKSCYSLKILPNHMHDIVTLCHLDIQGAYELEEMQKKMSKLMHLNFLSNYIIGEQEDNGIRELGTMDNLHGSFCISKLENVKNSGEALEAKMGNKKHISTLNLLWSFDGDNDIDDTRIERDILDNLRPHENLKELSIVRYRGETFPEWLGFSCYLSMTKLMLGFCMNCCELPWLGQLPSLRHLLIRHLDRLEKIDFEIYKNNNGSFQRERPFKSLEILEFEDMHHWREWHFPNEFDGFPRLRILTIKFCPLFSGDLPDHLPALEVLNIAGCEKLACSMRRTPKLQQLYVEGHSFTSYGREPNEVAIKQTQLVKSVLEWLPHIQPPRVERLCISMCQTPISISTDYLPASLQSLQISVCPKLIFSEQLQHKSLTEINLQFCYSLKLLPLGSFPNLKKLTISLCQSLEYVVVPQALSSLGYLSISNCPSLVSLPLLGLAAPYLEELHICNCPEIDRFAEECLPPSLKTLEVDRCQKLASWITSNILQSQGLIHLGLGSCFDVKSFPSEGCFPTSLESLKFWNFPNLETLNCKGLHHLTSLKNLAITDCEKLENVTDENLLASIANIYIGGECPLRRKLEEMEHPRIHFVCYEQGNPKLSALQFQC	980

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc90799g00015	980	FunFam	Probable disease resistance protein At1g61300	92	262	-	-
	Stsc90799g00015	980	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	93	359	IPR027417	-
	Stsc90799g00015	980	Gene3D	Ribonuclease Inhibitor	747	957	IPR032675	-
	Stsc90799g00015	980	Gene3D	Ribonuclease Inhibitor	328	692	IPR032675	-
	Stsc90799g00015	980	PANTHER	DISEASE RESISTANCE PROTEIN RP	346	606	IPR044974	GO:0006952
	Stsc90799g00015	980	Pfam	NB-ARC domain	109	334	IPR002182	GO:0043531
	Stsc90799g00015	980	SUPERFAMILY	L domain-like	692	943	-	-
	Stsc90799g00015	980	SUPERFAMILY	L domain-like	337	713	-	-
	Stsc90799g00015	980	PRINTS	Disease resistance protein signature	306	320	-	-
	Stsc90799g00015	980	PRINTS	Disease resistance protein signature	208	222	-	-
	Stsc90799g00015	980	PRINTS	Disease resistance protein signature	635	651	-	-
	Stsc90799g00015	980	PRINTS	Disease resistance protein signature	135	150	-	-
	Stsc90799g00015	980	Gene3D	-	91	262	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc90799g00015	Stsc-Chr90799	76400	79906	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc90799g00015	128	323	WRKY Transcription Factor Family	AT5G45050	27.500	5.81e-07	52.0

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc90799g00015	-		-	ahf:112777741	866.3