Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90798g00005 ATGTCCTCCGAAGACATAGGACTCGTACCTGACCAGAGGATCGAAACCGGTCTCAACTCCTCACTCGTTTTCCAAGACGAACCCTTGCGCTTCAGCTGCGGGGGCCCGCAGCGTCGGGTCGGGGACCCGGGCCCGAAAACCCGGGATCTTGGTGGCTTCATCGATGATAAGATGTTCTCCATGGACCGCGACCGGTACTTCGCCGCACATGGCTCCGAGTTCCGCCGGAGCGTCTATGGCGACTGCTCTGGCCGCCGTGATCCGCCAGGCGCTCGCAATTGGAGTAGGAACGGGGGCGCTAATACTCCCAGCGGTGACGAATCCGACGGGGATGATGACGAAGATGATGATGACGATGATGACGACGATGAGGATGTCGAAGGTGATGAAGGGCTTGTTGGTGTTGGTGATGGAAGCAAGCGCAATTTGAACGCAATTGTTGATATTAACGGTAGCAGCGGTGGTGGCGGTGGTAATTTGGGTGGTGTTAGTGTTGCTGAGCGGATGGCAAATGGGAAAGGACAGCATCATTCCTCTTACGTTTCTAGTAGAGAAATGTTGGGAAAGGATGGGGATATGGGGCATCTGGTGCATAACAATGCGAGTGGTACTGATGAGGATCATCATCAGAGAGAGAGATTGGGTAAATCACAGAGTTCTGTAACCATTGCTGAAACTGATTGTGATGAGTACTATTCACATTATCTTCATGGCACGGAAGGATCGGGTTCTGTGCAGAAAGTTATGGTGGATGACAATGGTTGTGGGTTTAGTGGAAGAAAGGATGTTCTGTATTCAAGCGAGTCAGGGGAATCGTTGAGGGCAATTCTTTCAGATCCTGTTACAGGTTCACTTATGGATGATGCCATGATATTACCTTGCGGGCATTCATTTGGCGGAGGTGGAATACAGCATGTTATTAGAATGAAAGCTTGCTGCACCTGTTCTCAACCCACATCTGAGGAATCAATATCTCCAAACCTATCACTTCGAGCTGCTGTGCAGGCATACCGCCGTGAAGAGGAGTCACAATTTTATCGGTCATCTAAAAGACGAAGAGAGAGATTTGATCAGGGTGGTTTTGGAGATTCATCTGTTGTAGAGCCACCAAGGGGCAGAGGTGTTCAATTTCCATTTGCTGTGATGGACCGTGTTATCATAAAGGGAAACAAAAGGACACCGCAACGGTTTGTTGGGCGGGAAGCTATTGTAACAACACAATGCCTTAACGGATGGTATGTGGTAAAGACATTGGACAATGCAGAGAGTGTGAAATTACAGTATCGTTCCCTTGCTAAGGTTTTGGATGATTCTTCAAAACCTGCCTCCACCAAGATATCACCTAATTGGCGTTAG 1356 0.4912 MSSEDIGLVPDQRIETGLNSSLVFQDEPLRFSCGGPQRRVGDPGPKTRDLGGFIDDKMFSMDRDRYFAAHGSEFRRSVYGDCSGRRDPPGARNWSRNGGANTPSGDESDGDDDEDDDDDDDDDEDVEGDEGLVGVGDGSKRNLNAIVDINGSSGGGGGNLGGVSVAERMANGKGQHHSSYVSSREMLGKDGDMGHLVHNNASGTDEDHHQRERLGKSQSSVTIAETDCDEYYSHYLHGTEGSGSVQKVMVDDNGCGFSGRKDVLYSSESGESLRAILSDPVTGSLMDDAMILPCGHSFGGGGIQHVIRMKACCTCSQPTSEESISPNLSLRAAVQAYRREEESQFYRSSKRRRERFDQGGFGDSSVVEPPRGRGVQFPFAVMDRVIIKGNKRTPQRFVGREAIVTTQCLNGWYVVKTLDNAESVKLQYRSLAKVLDDSSKPASTKISPNWR 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90798g00005 451 MobiDBLite consensus disorder prediction 78 139 - -
Stsc90798g00005 451 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 272 342 IPR013083 -
Stsc90798g00005 451 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 8 445 - -
Stsc90798g00005 451 ProSiteProfiles U-box domain profile. 272 344 IPR003613 GO:0004842|GO:0016567
Stsc90798g00005 451 MobiDBLite consensus disorder prediction 32 54 - -
Stsc90798g00005 451 MobiDBLite consensus disorder prediction 344 367 - -
Stsc90798g00005 451 SUPERFAMILY RING/U-box 271 343 - -
Stsc90798g00005 451 MobiDBLite consensus disorder prediction 106 131 - -
Stsc90798g00005 451 MobiDBLite consensus disorder prediction 344 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90798g00005 Stsc-Chr90798 50068 53718 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90798g00005 217 450 Plant U-box Gene Family AT5G05230 60.166 7.47e-89 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90798g00005 - - pcin:129302449 606.29