Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90790g00007 ATGAGAGGAAGGAGTTACAGCCCCTCACCACCGCCGCCACGGGGTTACAGCCGAAGAGGAAGGAGTCCGAGCCCTAGAGGCCGATACTCTGGCCGCCCTAGAGATCTACCTACCAGCCTTCTCGTTCGTAACCTTCGCCATGATTGTAGGCCAGAGGACCTTCGCAGACCTTTTGGTCAGTTTGGTGCCCTTAAGGACATTTACTTGCCTAAGGATTATTACACTGGAGAACCCCGTGGTTTTGGTTTTGTCCAGTATGTGGATCCTGCTGATGCAGCCGATGCTAAATATCATATGGATGGTCAAGTTCTACTTGGTCGGGAGTTGACTGTTGTCTTTGCTGAGGAGAATAGAAAGAAGCCAAGTGAGATGAGAACGAGGGAGAGAAGGGGCCGATATGATCGAAGAAGGTCTCCCCCTCGTTATTCTCGATCACCCCGCTACTCTCGATCCCCACCACCNNNNNNNNNNAGCCGTGACTATTATTCCCCTCCTCCTAAAAGAAGGGAATATTCAAGATCTCCCTCGCCCGAAGGTAGAAGATACAGTCGAGAAAGATCGTACTCACATCATAGTAGAGAGAGGTCATACTCGCAGTCTCCACCCTATAATGGTGGCTCAAGGAGCCGTAGTCAAAGTCCGGCGAAGGGCCCAACGCGGAGCAGAAGTCCAACTCCAGATCGCGATGTTATGGAACCAGCAGAGCGTGGCAGGTCCCCCAGTCAGTGA 729 0.5158 MRGRSYSPSPPPPRGYSRRGRSPSPRGRYSGRPRDLPTSLLVRNLRHDCRPEDLRRPFGQFGALKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKYHMDGQVLLGRELTVVFAEENRKKPSEMRTRERRGRYDRRRSPPRYSRSPRYSRSPPPXXXSRDYYSPPPKRREYSRSPSPEGRRYSRERSYSHHSRERSYSQSPPYNGGSRSRSQSPAKGPTRSRSPTPDRDVMEPAERGRSPSQ 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90790g00007 242 SMART rrm1_1 39 112 IPR000504 GO:0003723
Stsc90790g00007 242 SUPERFAMILY RNA-binding domain, RBD 38 143 IPR035979 GO:0003676
Stsc90790g00007 242 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 37 226 - -
Stsc90790g00007 242 MobiDBLite consensus disorder prediction 1 38 - -
Stsc90790g00007 242 MobiDBLite consensus disorder prediction 120 242 - -
Stsc90790g00007 242 MobiDBLite consensus disorder prediction 194 220 - -
Stsc90790g00007 242 MobiDBLite consensus disorder prediction 120 141 - -
Stsc90790g00007 242 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 40 109 IPR000504 GO:0003723
Stsc90790g00007 242 Gene3D - 30 150 IPR012677 -
Stsc90790g00007 242 MobiDBLite consensus disorder prediction 1 18 - -
Stsc90790g00007 242 MobiDBLite consensus disorder prediction 163 193 - -
Stsc90790g00007 242 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 38 116 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90790g00007 Stsc-Chr90790 75554 79720 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90790g00007 38 164 Eukaryotic Initiation Factors Gene Family AT4G34110 25.385 3.27e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90790g00007 K12900 - gmx:100775883 262.307