Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Stsc90789g00003 | ATGACGATGTCGTCGTTGTTTCATGAAAAACGTCACCGTTCGGTCTTCGAGCTCTCACCTGGCTTCTTCGACTCTTGCTACATTCTACCTTCTCCTCACTCTTCTTCTTCGGTTTACGAGCACAACGACAATGATCCTCGCAACGCAAGCCTTGAAACGCCCTCAAACGACGTCGTCGCTGATGGTCCCCAAAACGCCGTCGTTTCGGCACCTAGGTGGACCTGCAACACCTGTAAGGCTCAATTCGATTCTCTCCAAGACCAGCGTTCGCATTTCAAATCTGATATTCATCGATTTAATGTTAAGCTGACAGTTGCGGGAAAGAATACTGTAAAAGAAGAGGATTTTGAGGTTCTAACATCTGAATTTGTCAAAGACTACGATGTTTCGAGCATATCAGGATCAGAGAGTGACGACAGTGAAAATGAGTCTGAAAATCTCAATGAAGTGCGTGACAAGTCAAGAGAAATTCTTAAACAAAAGCTATTTGTTGGTCTTCAATCGGGGCAAAGAGTTTCTCTCTGGAAGTGCTTGATTATGAATATGACTGATGAGAATGGAAGTGCTGAGAGCGAAGTGTGTGAGAGGTTGAAATCACTGGCTCGTGAGTCCAGGGATAATAGTCATTTGCGAATCGTACTGCTTGCATCTGGTGGACACTTTGCTGGTTGTGTCTTTGATGGTGATACAGTTGTGGCTCACAAGACCTTTCACAGATATGTTGTGAGGGCCAAGGCAGGAAAGAAACAATCATCAAAAGATGCTTCTGGCAGGGCTGCACACTCTGCTGGTGCTTCACTTCGTCGTCATAATGAACTTGCACTAAAAAAGGAAGTTCAAGAACTGCTTACTTCTTGGAAACCTTATTTTAACGCTTCTGATTGCATTTTTATAAATGCACCTTCAAGTAGTCGTCAATTGTTCTATGATGGAGAAAAACCATACTTTTCCAATCCGCATTGTTCTATCAGAAATATTCCTTTGACTGTTCGGAGGCCTACTTTCAGGGAAGCAAAACGTGTATATTGCCAGTTGACTCAAGTATCCTGTGCAATGGATGAGAAGGAAACTTTACAGAGCAACAAAGAGGGCTTAATATCAATTCCAACTGCTATAGGAAATACCAACCCACCCTCTAGCAAAGGTGACATGATTGAGCTGGATAACAAAGATGAGGCTGAATCTGTTTCAACTAAAAAGGATGCACAACCTGTTTTGAGTGATGAAGAGAGTGAGAACGAGCTACCTGGCATATCAACTCCGTTACATCAAGCAGCAAAATCTGGAGACTCTCAGACTGTCATGGAACTCCTGGAACAGGGCTTGGATCCTTGCGTTAAAGATGAAAGGGGACGGACCCCATATATGTTGGCAAATGAGAAGGAAGTCAGAAATACTTTTAGAAGGTTCATGGCATCAAACCCTGACAAATGGGATTGGCATGCAGCAAAAGTTCCTAGTGCATTGACCAAAGAAATGGAAGAATCACAAGCTGCTAAACAGGTAGAAAAAGAAGCCAAGAGAAAAGCCAGAGCAAAAGAATTAAAGAAATTAAAGAAAGCCAAAGAAAAGAAGGCTCAGGCAGAAGCTGCATTGCTTAAGAATGATTCGAAAGCTGCAGAAAAGCAAGTGACTGCGCCAGCTTCTTCTAAGGGACAATCACAATCCAAAAGTGGTGTGAAATTATCTAAAGAGGAGGAAATAAGAAAAGCGCAGGCTGAAGAAAGGGAAAAGCGAGCAGCCGCTGCAGAGAGAAGAATGGCTGCCCTCAAAATTCAAGAGAACAGTTCAACCACCGCACCTCGCATTTCGGAGCCTAAAGGAGGATTAGCTGGTGAAATTTACTGTTCCTGTTGTAATTCATCACTTGCTGGTAAAGTTCCCTTCCACCGCTATAACTATAATTACTGCAGCACATCATGCATGCACGTACACAGGGAGTTCCTAGAAGATGGATGA | 1959 | 0.4324 | MTMSSLFHEKRHRSVFELSPGFFDSCYILPSPHSSSSVYEHNDNDPRNASLETPSNDVVADGPQNAVVSAPRWTCNTCKAQFDSLQDQRSHFKSDIHRFNVKLTVAGKNTVKEEDFEVLTSEFVKDYDVSSISGSESDDSENESENLNEVRDKSREILKQKLFVGLQSGQRVSLWKCLIMNMTDENGSAESEVCERLKSLARESRDNSHLRIVLLASGGHFAGCVFDGDTVVAHKTFHRYVVRAKAGKKQSSKDASGRAAHSAGASLRRHNELALKKEVQELLTSWKPYFNASDCIFINAPSSSRQLFYDGEKPYFSNPHCSIRNIPLTVRRPTFREAKRVYCQLTQVSCAMDEKETLQSNKEGLISIPTAIGNTNPPSSKGDMIELDNKDEAESVSTKKDAQPVLSDEESENELPGISTPLHQAAKSGDSQTVMELLEQGLDPCVKDERGRTPYMLANEKEVRNTFRRFMASNPDKWDWHAAKVPSALTKEMEESQAAKQVEKEAKRKARAKELKKLKKAKEKKAQAEAALLKNDSKAAEKQVTAPASSKGQSQSKSGVKLSKEEEIRKAQAEEREKRAAAAERRMAALKIQENSSTTAPRISEPKGGLAGEIYCSCCNSSLAGKVPFHRYNYNYCSTSCMHVHREFLEDG | 652 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Stsc90789g00003 | 652 | MobiDBLite | consensus disorder prediction | 130 | 149 | - | - | |
| Stsc90789g00003 | 652 | MobiDBLite | consensus disorder prediction | 413 | 428 | - | - | |
| Stsc90789g00003 | 652 | ProSiteProfiles | Ankyrin repeat profile. | 420 | 449 | IPR002110 | GO:0005515 | |
| Stsc90789g00003 | 652 | MobiDBLite | consensus disorder prediction | 390 | 428 | - | - | |
| Stsc90789g00003 | 652 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 75 | 97 | IPR013087 | - | |
| Stsc90789g00003 | 652 | MobiDBLite | consensus disorder prediction | 37 | 60 | - | - | |
| Stsc90789g00003 | 652 | PANTHER | ANKYRIN REPEAT AND ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 | 9 | 650 | IPR047139 | - | |
| Stsc90789g00003 | 652 | SUPERFAMILY | beta-beta-alpha zinc fingers | 71 | 105 | IPR036236 | - | |
| Stsc90789g00003 | 652 | Coils | Coil | 564 | 593 | - | - | |
| Stsc90789g00003 | 652 | Pfam | Vms1-associating treble clef domain | 615 | 647 | IPR041540 | - | |
| Stsc90789g00003 | 652 | ProSiteProfiles | Ankyrin repeat region circular profile. | 420 | 449 | - | - | |
| Stsc90789g00003 | 652 | MobiDBLite | consensus disorder prediction | 560 | 585 | - | - | |
| Stsc90789g00003 | 652 | MobiDBLite | consensus disorder prediction | 390 | 407 | - | - | |
| Stsc90789g00003 | 652 | Coils | Coil | 493 | 543 | - | - | |
| Stsc90789g00003 | 652 | MobiDBLite | consensus disorder prediction | 542 | 559 | - | - | |
| Stsc90789g00003 | 652 | MobiDBLite | consensus disorder prediction | 526 | 585 | - | - | |
| Stsc90789g00003 | 652 | Gene3D | - | 408 | 532 | IPR036770 | - | |
| Stsc90789g00003 | 652 | Pfam | Bacteroidetes VLRF1 release factor | 212 | 350 | IPR041175 | - | |
| Stsc90789g00003 | 652 | SUPERFAMILY | Ankyrin repeat | 420 | 472 | IPR036770 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Stsc90789g00003 | Stsc-Chr90789 | 12713 | 18795 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Stsc90789g00003 | 10 | 599 | C2H2 Transcription Factor Family | AT1G01930 | 54.876 | 0.0 | 579 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Stsc90789g00003 | K26089 | - | gmx:100527709 | 822.002 |