Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90787g00008 ATGGAGTTTGTGGGCAAAATCGTAAAGAAAGAGGTCAAAGGTGTTGGGTTCGTCACCGGAACCGTGAAATCCTACGACCCTTCTTCCAGTTTCGTCGAGATCCTCTACGACAACGGCGATTCTGAGGAGCTGGAATCAAACAAAGTGGTTTTGCTCCTTCCACAAGCTCAGCCGGAGCTCGCTAAGCCCAAGCCGAGGGTTGGCCGGAAGCCCAAGAAGCGCCGCCGTGTTGAGAAGAAGGCCGGAGCTGGAGACAGTTCAGGTAATGATGCTAATGAGAATTTTGTTTTGGAAGTTAGTGAAATTAGGGCGAATTCGGAAGTGAATGGTGAATTAGGTCTTGGAATTGAGGGAAATCTAGGTAATGGGAATGCTAATACGAATGGGAGTGTGGAGTCAATTGTGAGTGATGGAACTCTTGGGAGGGAAATTGGGGTTGAGGGGGATTTAAATTTGAATAAGGATGTAGCCGTAAATGGAAATTGTCTTAGGGATGAGCTTGATTTGAATTCTGGGATTAATCTGAATGAGGATTTGAATCTTAATGATGGGTTTGATGGCACTGAGGTTGGTTTGAAGAAAAGAGATTGTATTGACTTGAATTTGGACGTCAACAATGAGGATGATGTCAGCATGAACGGGGGATCCTTGAGCGGCCGGAAGTTGCAGCGGGAATGTATTTTTGATTTGAATGTCGAGGTGTGCGAAGAAGTCAAGGAAACTCGCAGCGAAATTGCGGATGGGAATGGTATTTATGAGGCAAATACCATATCGGCTAAGATGAGTCAGCTCCAAGGAGATATGGCAGATATTAATCAAAGATCTATGGAAATTGATGATTTTCGTAATGATTTGAATGATATTTCCAAAGATATCACACCGGAGTTAAATTGTGTTTCTGCCACACATGCGGCTATAGATACTTCTGTGTGTTCGGTTGAAGGAAAGGAAGGCAAAGATATGAGAGGAGATGCAGAAGCTATTGGCTCTCCTCAGGTACGGGATGTTGTTTCTGTGGAGGCTCAGCAAATGGATAGTCCTTGTGAAGCCGGTTTAGCAGTAACTCGTGAAGACCAAGAGGAGACAGGAGGTCTTAGCAAACAAGGAAGGGGCCGAAGGAAAAGAAGGAAAATAGCAGATGATCTAAAGAATACCCCAGAGACAGGTTTAAGGAGGAGCTCTCGCCGGGCATTAGCTAGACAAAATGCTTCAAGCACCATAGTGTCACTGGAGATGGATGATCCTATGTTGCCCATGGAAACCAGTACCTTGGCAGTAGAAAAACCTGTAACTGTAATATCCAGTCATAAACAGTCCAATATTTGTCAGCCAAAGTTGCAATTACCCCCTTCTTCCCAAAACTTAAATCTAGATGGTGTTCCTGTTCTTGAAGTCTTTTCTATTTATGCTTGTGTAAGGTCGTTCAGTACGTTATTATTTTTGAGCCCATTTGAGTTGGAGGATCTTGTAGCTGCTTTGAAGGCTGAAACCCCCAATATATTATTTGATAGCATTCATGTGTCTATTTTGGAAACTCTGAGAAAGCATTTGGAAGACCTTTCCAATGAGGGCATCCAATCTGCATCTGATTGTCTGAGGAATCTAAATTGGGATTTTTTGGACATCATCACATGGCCCATTTTCATGGCCGAATACCTTCTGATTCATGGTTCAGGATTTAAAACTAGGTTTAATCTTAACTACTCAGATTTCACAACTGACTACTTCAAACAACCTGTGACTGTGAAGGTTGGGATTCTTCAGTATCTCTGTGATGATATGATTGAAGCAGAAGCAATAAGGTCTGAGCTTAACAGGAGATCGTTGGCAACCGAGAACAGTGTCGGATCCGATCAGAATATGTATTTTGACACTTTTAAGAAACGAAGAGCTGTAGCGGATGTATCTGGTGTTTCCTGCTTGACTGAGGAGGCTGCAGATGACAATGACTGGAACAGTGATGATTGCTACCTTTGCAAGATGGATGGTAATTTAATATGCTGTGATGGTTGCCCTGCTGCATTCCACTCCAAGTGTGTTGGAATTGCAAGTGACAATCTTCCTGAAGGGGACTGGTATTGCCCTGAGTGTGCAATTGGCACACACAGGGCTTGGATGAAATCACGTAGGTCACTTCGAGGAGCAGACTTGATAGGGACTGATATTCAGGGCCGTCTTTATTTTAACTGCTATGGTTACTTGTTAGTGTCAGAATCATCTGATGATGGGTCTTTGTTCAATTACTACCACAGAAATGATCTACATTTAGTGGTTGAAGCTTTAAAGTCTATGGATGCTTTGTCTGGAGGCATATTAATGGCTATCTACAAGCATTGGGATGTCCCTGCTAACCCAAGTGTGGAGACTAGTAACTTGGTAGTATTGAACCAAAGCTCCACCAAAAACATTCATGCAAAGGGAAAATCTTCTGCAATGCAGACATCCTTAGCTCCCTTTACTTCTTCAAAAGCATGTTTGGGGAATAATTGGGTGGGTGATGAAAGAAAGTTAGATGAAATTTCTACAATTGACTGTTGTACGCATCCTGGCCAAGAGTTTCCAAAAGCTGGGAATCGTTTGGATTCAGCAACAACTATAGAAAGTCCTTGTGCTGCTTCAGAAGGATCAGCTGATACCACACAAGTTAGGCCAGGCATCGAGAATGTTCAAATGAATGGGCTTTACGATCCCAATAGATCTGATGAATCCTTGAATCAGTCAGGAATACCAGAAAAACATCATCCAGTTGGTGACAGTTCTTTGGTATCATCTAGCTTAGACGTGGAACATAAGAGGAAATTAAGATCTGTGGGTGACAGTTGTGCCCAGTTGCCTGAAGATAAGGATACTTCTGATGTGCCTTTTGTTATAGACTACACAAACTATTACAGCTTTGCCCGAACAGCCTCATTAATTGCACAGGAGTTGATGAGTAAGTCACCTGAAAAGATAAATAAGAATATTGTATTGACTGAAGAAGACATAATTTCAGACCAAGTCAAGGCTATTATGAAGAAATCTACAAGCTTCTGCTGGCCAAGTATTCAAAACATGCATGCAGCTGCTCATAAGGAAAATTGTGGGTGGTGCTTTTCTTGCAAAGTTGCAAATGATGATAGGGATTGCTTGTTTAATTCTGTCATGAAGCCTGTTTGGGAAGTGTCTGAAAGTTCTTTTGGTGGTCTTCAGCCCAGGATGATCCAGAATGGACATCTTAGGGATATCGTCTGTCATATTCTCTCACTTGAGGATCGATTACGCGGGCTTTTGTTGGGTCCATGGTTGAATTTACATCAAACTGATCTTTGGCATAAGGAGCTTATGAAGACTGGTGATCTTCTTCCTGCTAAAAAAATATTGCTTATTTTGGAATCCAATTTGCGGCCTTTTGCTTTTACATCTGATTGGTTAAAGCATGTGGATTCTATTGGTACCATGGGATCAGCTATTCATTTTGTGGCCAGTACACGTAACTCATCAAGGTATGGTATTGGGAGGAAAAGGGCTAGGTTTTCTGATGCTGAACCCAATTCATCTTCAAACAATGCAAGTGGTTTGGCAATGTATTGGTGGAGAGGTGGTAAGCTTTCCCGAAAATTGTTTAATTGCAAGAGTTTGCCCCGCTCATTGGTTACCAAGGCTGCTAGACAAGCGGGGTGCTCAAAGATACCAGGCATAATGTATCCTGAGAATTCAGATTTTGCAAGGCGAAGCAAATGCATTGCTTGGCGTGCTGCTGTTGAGATGTCAACAAGTTTTGAGCAGCTTGCTGTACAGGTCAGAGAGCTTTATTCGAACATCAAGTGGCGTGATATTGAAAATAGCCATCCTCAATCTGTCTTGGACAAGGAATCTAGAAAAGCAGTTAGACTGTTCAAGAAAGCAATTGTACGCAGGAAGTCCACTGAAGGGAAATCTGTGAAGTACCTTATTGATTTTGGGAAGAGAAGGGCTATTCCTGATGTTGTTACAAAACATGGTTCTCTGTTGGAAGAACCCTCAAGTGAGAGAAAAAAGTATTGGCTGGAAGAATCTTATTTACCGATGCATCTCTTAAAGAATTTTGAGGAAAAAAGAATCATTCGGAAGTCCGATGTAAAGAAACTTGGGAAAACTATTGAGATTGGTAGAGTTAATAGGAAGGTTCTTGAACAAAGGGGATTTCCGTATTTGTTTTCTAGGCTGGAAAGATCTGATTCTCATCAATGTGGGCATTGCAACAAAGATGTTCCTATCAGGGATGCTGTAACCTGCCAGTATTGCAAAGGATATTTTCATAAGAAGCATGTAAGGAAATATGGTGGCACAAAGGCTACTAAATGCACATATTCATGTCACAGATGCGAGAGTGGGGTGCGTCCAAAGACTAAAACTAATTCAAAGAGAAAGAGGGTCGACTCTAAACAGCAGACGGTTCAATCACAGACAAGTAAAAGTACCCCCTCAGTTAGTAAGTCAGTGAGCCTTAAAGGCAATAAAAGGGCTTTGAGTAAGGCACGGAAGGCAAAATCTCGAACTAATAAGAAGATCACACCAAGTGTACCACTTCGTCGTTCTACTAGGAAGGCCAAATCCTTGTACATGTACAGTCAAATGAATGGAGGGCGGAAAAAGGGAATTCAAAATAAAAAGAAAGCTGGACGTAAAAAGGGGAAGCCAAATAAAAACAATCAGAAGCCCAAAGAAACTGCTGATCAGCCTGAGAAGAGTATGCCAACTACTATTTGTAAGAAAAGAGCAAACGTTAATAGCAGCTACTGGCATAATGGTCTTTGGTTGTCTAGAAAGCCAAATGATGAACGGGTAGCACTGTTTCGGGAAAAAAAGCATGTTTTCTCCTCTGAGGGTTTTTCTGCTGCCGGTGATAATCCTAAATGCCACATTTGTTCTGGAGATGGACCTGCATTAGATTATATTGCTTGTGATAATTGTGGAGATTGGTATCATGGGGATGCTTTTGGGCTCACCGTAGAGAATTCCAGACAATTAATTGGATTTAGGTGTCATGTTTGTCTTCAGAGGGATGCTCCGATCTGCCCCCATATGACGTGTAAAGCACTGTCTCTTGCTGGAAACAGCACTAATGAGCATGCTGAGGAATTATCAAATCCTGTATCTCTCCAGTCTCCGAGTGAGGTTTGA 5142 0.4207 MEFVGKIVKKEVKGVGFVTGTVKSYDPSSSFVEILYDNGDSEELESNKVVLLLPQAQPELAKPKPRVGRKPKKRRRVEKKAGAGDSSGNDANENFVLEVSEIRANSEVNGELGLGIEGNLGNGNANTNGSVESIVSDGTLGREIGVEGDLNLNKDVAVNGNCLRDELDLNSGINLNEDLNLNDGFDGTEVGLKKRDCIDLNLDVNNEDDVSMNGGSLSGRKLQRECIFDLNVEVCEEVKETRSEIADGNGIYEANTISAKMSQLQGDMADINQRSMEIDDFRNDLNDISKDITPELNCVSATHAAIDTSVCSVEGKEGKDMRGDAEAIGSPQVRDVVSVEAQQMDSPCEAGLAVTREDQEETGGLSKQGRGRRKRRKIADDLKNTPETGLRRSSRRALARQNASSTIVSLEMDDPMLPMETSTLAVEKPVTVISSHKQSNICQPKLQLPPSSQNLNLDGVPVLEVFSIYACVRSFSTLLFLSPFELEDLVAALKAETPNILFDSIHVSILETLRKHLEDLSNEGIQSASDCLRNLNWDFLDIITWPIFMAEYLLIHGSGFKTRFNLNYSDFTTDYFKQPVTVKVGILQYLCDDMIEAEAIRSELNRRSLATENSVGSDQNMYFDTFKKRRAVADVSGVSCLTEEAADDNDWNSDDCYLCKMDGNLICCDGCPAAFHSKCVGIASDNLPEGDWYCPECAIGTHRAWMKSRRSLRGADLIGTDIQGRLYFNCYGYLLVSESSDDGSLFNYYHRNDLHLVVEALKSMDALSGGILMAIYKHWDVPANPSVETSNLVVLNQSSTKNIHAKGKSSAMQTSLAPFTSSKACLGNNWVGDERKLDEISTIDCCTHPGQEFPKAGNRLDSATTIESPCAASEGSADTTQVRPGIENVQMNGLYDPNRSDESLNQSGIPEKHHPVGDSSLVSSSLDVEHKRKLRSVGDSCAQLPEDKDTSDVPFVIDYTNYYSFARTASLIAQELMSKSPEKINKNIVLTEEDIISDQVKAIMKKSTSFCWPSIQNMHAAAHKENCGWCFSCKVANDDRDCLFNSVMKPVWEVSESSFGGLQPRMIQNGHLRDIVCHILSLEDRLRGLLLGPWLNLHQTDLWHKELMKTGDLLPAKKILLILESNLRPFAFTSDWLKHVDSIGTMGSAIHFVASTRNSSRYGIGRKRARFSDAEPNSSSNNASGLAMYWWRGGKLSRKLFNCKSLPRSLVTKAARQAGCSKIPGIMYPENSDFARRSKCIAWRAAVEMSTSFEQLAVQVRELYSNIKWRDIENSHPQSVLDKESRKAVRLFKKAIVRRKSTEGKSVKYLIDFGKRRAIPDVVTKHGSLLEEPSSERKKYWLEESYLPMHLLKNFEEKRIIRKSDVKKLGKTIEIGRVNRKVLEQRGFPYLFSRLERSDSHQCGHCNKDVPIRDAVTCQYCKGYFHKKHVRKYGGTKATKCTYSCHRCESGVRPKTKTNSKRKRVDSKQQTVQSQTSKSTPSVSKSVSLKGNKRALSKARKAKSRTNKKITPSVPLRRSTRKAKSLYMYSQMNGGRKKGIQNKKKAGRKKGKPNKNNQKPKETADQPEKSMPTTICKKRANVNSSYWHNGLWLSRKPNDERVALFREKKHVFSSEGFSAAGDNPKCHICSGDGPALDYIACDNCGDWYHGDAFGLTVENSRQLIGFRCHVCLQRDAPICPHMTCKALSLAGNSTNEHAEELSNPVSLQSPSEV 1713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90787g00008 1713 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 642 718 IPR013083 -
Stsc90787g00008 1713 MobiDBLite consensus disorder prediction 1538 1555 - -
Stsc90787g00008 1713 ProSitePatterns Zinc finger PHD-type signature. 656 697 IPR019786 -
Stsc90787g00008 1713 CDD PHD2_CHD_II 656 697 - -
Stsc90787g00008 1713 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1618 1678 IPR013083 -
Stsc90787g00008 1713 MobiDBLite consensus disorder prediction 344 397 - -
Stsc90787g00008 1713 MobiDBLite consensus disorder prediction 894 923 - -
Stsc90787g00008 1713 Pfam PHD-finger 656 698 IPR019787 -
Stsc90787g00008 1713 MobiDBLite consensus disorder prediction 56 91 - -
Stsc90787g00008 1713 ProSiteProfiles Zinc finger PHD-type profile. 653 700 IPR019787 -
Stsc90787g00008 1713 SUPERFAMILY FYVE/PHD zinc finger 1614 1674 IPR011011 -
Stsc90787g00008 1713 Pfam DDT domain 464 515 IPR018501 -
Stsc90787g00008 1713 PANTHER PHD FINGER FAMILY PROTEIN 2 1677 - -
Stsc90787g00008 1713 SMART testlast3 459 519 IPR018501 -
Stsc90787g00008 1713 MobiDBLite consensus disorder prediction 1451 1575 - -
Stsc90787g00008 1713 SMART PHD_3 655 698 IPR001965 -
Stsc90787g00008 1713 SMART PHD_3 1625 1672 IPR001965 -
Stsc90787g00008 1713 MobiDBLite consensus disorder prediction 1469 1491 - -
Stsc90787g00008 1713 MobiDBLite consensus disorder prediction 354 368 - -
Stsc90787g00008 1713 MobiDBLite consensus disorder prediction 378 394 - -
Stsc90787g00008 1713 ProSiteProfiles DDT domain profile. 459 519 IPR018501 -
Stsc90787g00008 1713 SUPERFAMILY FYVE/PHD zinc finger 644 705 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90787g00008 Stsc-Chr90787 60870 69750 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90787g00008 1 1682 PHD Transcription Factor Family AT5G12400 40.396 0.0 1080
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Stsc90787g00008 DDT 9.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90787g00008 - - gmx:100800973 2067.35