Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90787g00005 ATGGGATTTACATTTACTATGCAAGAAGAAGGGTCATCTTCTGTAACTTCATCACCCCTGCAATTCTTTACAATGATGTCACTTTCACCTAGCTTGGGATCCCCACACCCTTTGCTTAATGAACTAAAATCTGAGGAAAGGGGTTTGTGCTTGATCCATTTGCTTCTCACTTGTGCAAACCATGTAGCTGCTGGTAGTCTTGACAGTGCAAATGCTTTGCTTGAGCAAATTTCCATGCTTGCCTCGCCGGACGGCGATACTATGCAGCGGATCGCAGCCTATTTCACCGAAGCACTCGCTGATCGGATACTTAAGACATGGCCTGGGCTCCATAGAGCCCTCAACTCAACTAGAATGGTTATGGTTTCTGAAGAAGTTGTCACTAGGAAGCTCTTCTATGAGCTTTTCCCTTTCATGAAGGCAGCATTTGTTCTTACAAATCAAGCTATCATCGAGGCGATGGAAGGCGAGAAAATGATTCATATAATTGATCTCAATGCTGCTGAACCTGCTCAGTGGATTGCACTCCTACAAGCTCTGAGTGCTCGCCCTGAAGGTCCTCCTCATTTGAGAATCACTGGTGTTCATCAGAAGAAAGAGATTCTAGACCAAATAGCTCATAGACTGAGTGAAGAAGCAGAGAAGTTGGATATCCCATTCCAATTTAGCCCTGTAGTCAGCAAATTAGAGAACCTAGATTTTGATAAACTTCGTGTGAAAACCGGGGAGGCACTAGCTATAACTTGTATTCTCCAATTGCATTCGCTTCTGGCGTGGGACGACGAATCTGTGCAGAAAAGGAATCATCATTTGGCTAGAGCCTCAAATGGAATTCACCAGCAAAGAGCACAGCCTATGTTCCAAAGCTCATTGAGTGATTTGCTTGAGAAAGATGCAGCCAACGGATATGCACCTAGTCCTGACTCGGCCTCATCGTCTCCAGCATCGTTAACTGCTTCCAATTCAATGAATATGGAGAGCTTTCTAAACGCGTTATGGGGATTATCACCAAAGGTTATGGTTGTAACTGAACAAGACTCCAATCACAATGGTTTGACTCTTATGGAGAGGCTACTTGAAGCTCTATACTCTTATGCTGCATTATTTGATTGCTTGGAGTGCACTCTGTCAAGGACATCATTGGAGAGATTAAGGGTGGAGAAGATGCTATTCGGCGAGGAAATCAAGAACATTGTCGCGTGCGAGGGATTGGAACGAAGGGAAAGGCATGAGAAGCTGGATAAGTGGATCCAGAGACTTGATTTGGCTGGATTTACTAACATTCCCTTAAGCTATTTTGGTATGGTGCAAGCAAGGAGGTTGTTGCAGAGCTATAGCTGTGAGGGATATAGAATGAGAGAGGAAAATGGCTGTGTAGTGATTTGTTGGCAGGATAGGCCATTGTTTTCAATATCAGCTTGGAGATCTAGGAAGTAA 1437 0.4412 MGFTFTMQEEGSSSVTSSPLQFFTMMSLSPSLGSPHPLLNELKSEERGLCLIHLLLTCANHVAAGSLDSANALLEQISMLASPDGDTMQRIAAYFTEALADRILKTWPGLHRALNSTRMVMVSEEVVTRKLFYELFPFMKAAFVLTNQAIIEAMEGEKMIHIIDLNAAEPAQWIALLQALSARPEGPPHLRITGVHQKKEILDQIAHRLSEEAEKLDIPFQFSPVVSKLENLDFDKLRVKTGEALAITCILQLHSLLAWDDESVQKRNHHLARASNGIHQQRAQPMFQSSLSDLLEKDAANGYAPSPDSASSSPASLTASNSMNMESFLNALWGLSPKVMVVTEQDSNHNGLTLMERLLEALYSYAALFDCLECTLSRTSLERLRVEKMLFGEEIKNIVACEGLERRERHEKLDKWIQRLDLAGFTNIPLSYFGMVQARRLLQSYSCEGYRMREENGCVVICWQDRPLFSISAWRSRK 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90787g00005 478 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 47 470 IPR005202 -
Stsc90787g00005 478 Pfam GRAS domain family 51 475 IPR005202 -
Stsc90787g00005 478 ProSiteProfiles GRAS family profile. 42 475 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90787g00005 Stsc-Chr90787 42837 44406 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90787g00005 8 478 GRAS Transcription Factor Family AT1G50420 65.696 0.0 636
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Stsc90787g00005 GRAS 4.4e-138 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90787g00005 - - gmx:100814131 762.681