Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90787g00001 ATGCTTCAAAGCTTGGTCCCTCGTTCGCCTATCAATCCAAACCCTAATAACTCCATGAACACCAAGCGCGACCGCCCCCACGCCGCCGCAGCTTCTCCCGCAGACGAGGAGCCTTCCTTCAAGCGCGCAAATTTCTCCGGCGACAAGTCATCATCGGCGCAGGCCGTGGGAGAACCCGAGGGACACGAGGAAGAACAGCAGCAACAAGTTTTCGAAGCGGCTGAAGCCGGAGGAGGAGAATCCACCGGACTTAAGCTTCTCGGTTTGCTGCTCCAATGCGCGGAGTGCGTCGCCATGGACAACCTTGACTTCGCGAACGATCTCCTCCCGGAGATCGCGGAGCTCTCGTCGCCGTTTGGAACCTCGCCGGAGCGAGTCGGCGCGTACTTCGCACAGGCTCTGCAGGCTCGCGTGGTGAGTTCATGCCTCGGAGCGTACTCGCCTCTCACGGCGAAATCGGTAACCCTAACTCAGTCGCAGAGAATCTTCAACGCGTTCCAGTCCTACAACTCGGTGTCGCCGCTCGTGAAGTTCTCTCACTTCACCGCAAACCAAGCGATCTTCCAAGCTCTCGACGGTGAGGATCGCGTTCACATCATCGACCTCGACATCATGCAAGGTCTCCAATGGCCAGGACTGTTCCACATCCTCGCCTCGCGATCCAGGAAGATCCGGTCCATGCGGATCACCGGATTCGGATCCTCGTCGGAGCTTCTAGAATCCACTGGAAGAAGGCTCGCCGATTTCGCTAGCTCGCTCAGTTTACCGTTCGAGTTTCATCCGGTGGAAGGGAAAATCGGAAACATCACGGACCTGAGTCAACTCGGCGTTCGACCAGGTGAAGCGATCGTAGTTCACTGGATGCACCATTGCTTATACGACATAACAGGGAGCGATTTAGGTACGTTGAGATTGCTGAGTCAGCTGAGGCCGAAGCTTATCACGACGGTGGAGCAGGATCTGAGCCACGCCGGGAGCTTCCTCGCGAGGTTCGTGGAGGCTTTGCATTATTACAGCGCCTTATTCGACGCGCTGGGTGACGGTTTAGGTGCAGACAGTTTGGAGAGGCACACGGTGGAGCAGCAGCTTCTAGGTTGCGAGATCAGGAACATCGTGGCCGTTGGAGGACCAAAGAGAACCGGTGAGGTTAAAGTGGAGCGGTGGGGAGAGGAATTAAAACGGGTCGGGTTTAGACCCGTTTCGCTTCGGGGAAACCCGGCCTCTCAGGCTAGTTTGCTTCTTGGGATGTTCCCTTGGAGAGGGTATACCCTGGTTGAGGAAAACGGTTCTCTGAAGCTTGGTTGGAAGGATCTTTCTTTGTTGACTGCTTCTGCGTGGCAACCGTCGGATTTGATTACTTATCCTGATTAA 1371 0.5587 MLQSLVPRSPINPNPNNSMNTKRDRPHAAAASPADEEPSFKRANFSGDKSSSAQAVGEPEGHEEEQQQQVFEAAEAGGGESTGLKLLGLLLQCAECVAMDNLDFANDLLPEIAELSSPFGTSPERVGAYFAQALQARVVSSCLGAYSPLTAKSVTLTQSQRIFNAFQSYNSVSPLVKFSHFTANQAIFQALDGEDRVHIIDLDIMQGLQWPGLFHILASRSRKIRSMRITGFGSSSELLESTGRRLADFASSLSLPFEFHPVEGKIGNITDLSQLGVRPGEAIVVHWMHHCLYDITGSDLGTLRLLSQLRPKLITTVEQDLSHAGSFLARFVEALHYYSALFDALGDGLGADSLERHTVEQQLLGCEIRNIVAVGGPKRTGEVKVERWGEELKRVGFRPVSLRGNPASQASLLLGMFPWRGYTLVEENGSLKLGWKDLSLLTASAWQPSDLITYPD 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90787g00001 456 MobiDBLite consensus disorder prediction 1 23 - -
Stsc90787g00001 456 Pfam GRAS domain family 88 447 IPR005202 -
Stsc90787g00001 456 ProSiteProfiles GRAS family profile. 77 447 IPR005202 -
Stsc90787g00001 456 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 66 442 IPR005202 -
Stsc90787g00001 456 MobiDBLite consensus disorder prediction 1 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90787g00001 Stsc-Chr90787 9442 10812 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90787g00001 46 450 GRAS Transcription Factor Family AT5G41920 69.512 0.0 548
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Stsc90787g00001 GRAS 6e-115 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90787g00001 - - gmx:100816249 732.635